Detail information of Zm00001d014302_circ_g.2


General Information
CircRNA Name Zm00001d014302_circ_g.2
ID in PlantcircBase zma_circ_001952
Alias circ2092
Organism Zea mays
Position chr5: 40158085-40162625  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d014302
Parent gene annotation Vacuolar-sorting receptor 4
Parent gene strand -
Alternative splicing Zm00001d014302_circ_g.1 Zm00001d014302_circ_g.3 Zm00001d014302_circ_g.4 Zm00001d014302_circ_g.5 Zm00001d014302_circ_g.6
Support reads 31
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d014303_T001:4
Zm00001d014303_T003:3
Zm00001d014303_T002:4
Zm00001d014303_T004:1
Zm00001d014303_T001:4
Zm00001d014302_T001:2
Zm00001d014303_T003:3
Zm00001d014303_T002:4
Zm00001d014302_T003:4
Zm00001d014302_T004:4
Zm00001d014303_T004:1
Zm00001d014302_T002:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAAATCCTAAACCTACCTGGCAAGCAGAGAATGTTTTTCCGTTGCGAGTTTCATGCCAACATC
CTCCATGGTTTATCAAGCATTTTCCTGGTCCAGCAGcccttagtctgtatttgtacacaacata
acttcccgctgccacaacagcaacaactatcaagataccccacactgcagcccatgctgcttta
gcctgaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCTTAGTCTGTATTTGTACACAACATAACTTCCCGCTGCCACAACAGCAACAACTATCAAGAT
ACCCCACACTGCAGCCCATGCTGCTTTAGCCTGAACTGCTGTCTTGCCTGCAGATTAACCATTT
ATATATACTCAATTGATACACTAAGGATAAGCAAAAGCTATCAGTTGAGTTGGAAATTACTTAT
GCAGGTGTCATGCTCTCTGATGTACAAAAGGTCACCACTGCAAGTGCAGTCATAGCCACCCCAT
GTATCTTTGCAGTTGCATTCAGGACACTGACAAGCTTTTTTCTCCTTGCACTCATCAATGTCTG
CAATGAATTAGAAGAGATGTATTTTCTGCATTGCACTAAATATCTACTTCATTACCATGTAAAT
ACTACCAACAGTACAAAATCTATGTATATGTGTATAGCAAGTTGATTTAGGGTGCAAATATTTC
TCACTTCCGTTTCTCAAGGCAGAATGTTGAAATCAAAGACCATATAGATGAATTTATAAGTATA
GTGTCACATCAGGGAAAATAAGGCATTGTCTTCTTGTTCCACATTAAGGGAATTAAACAAGTCT
AATGTTGTTGAAGTGTAAACCCTTAAAATAAAGTCGGAAGCAGTCATTTAATATTTAAGAATAA
TAGTAGAGTTTGTTTCGATATGTGATTTGTTATTTAGGAATGTCCATTTAGATAAATAAACAAA
TAAAAAAATGTGTATTCACGCATCCCATGCAGGATCTTTGAATTGTGCATATAAATTTGATTTC
AAAACATCAATCAGGGTTGGGACATTTAAAACTGGAAATGAAAACTAAGATTAGAAATAGAAAA
GAAAATTTTAAAAAATGAAGTCTACCATGGTCGACTCCCTTAGCCCATTGGCCAAAAGGGCCAC
TACTCGGCGTATTGTCGGCCCACGCCAGATGGGCCGCGCGCCAAGCAACAGGAAGCGACACTCT
TTGTTCTCTTCTGTATTTTATTCACCTTGTCGGACGCGACGTCATCACAATGTCATGGCTGACA
TCACCCATACGCTTCTTTCAGTCGTTGACGGCTGGGCTCCTTGGCATCGTCTCGTATTTTCAGT
CGTATCTCCCCGGACGATGGATTTCCAAGACACAATGAACCGCCCCGTCAGATCCTTCTCCTTC
GTAACGAACACAAGTACACCGTAACAAACTTCCAGGAAATCACAACAAACTCGTCGATAGGTTG
TTCCCCACTCGGACACTTTTCTTCCACGACTATAAGAACGTCGAGGCTCGACATCTATCCCATG
TGCACGCGAGAGATCGCCATCACCGCGTGTGCGCAGCTGAGCTACCACCATCGCCAGACCGAAC
CTAGGAAAGAGAGGGGATGATATTTAAGTCATGCAAGAGCCATTATCTAGTCTTAGGAAGGGGT
CAGGCTCTACCACCAAAGCACGCCGCTCAAGCACGGAGGTTTCCTGAGCGGGGTAAGCACACAG
TGTGGGCAGGATTGCCCATCATGACGTGGAGCCGCCACACATGGTCGTCAGAGCTATGCGTAGG
ACTATGTACGGTAAGGATCCCTCCCCTAAGTTCGCTCTCACCTCTGCTACGCTTAGCACCTTCT
GGATCAAAGTTTCGAACATGAGAATCGAGTTTGGGAAAACCCGGCGATGGCGCCACCGTGCTGC
ACGGGATCGCTGCCGCAGTCCGTGGTTGGGAGAAAAAGATAATGCGGGGGGCGCTGTGTATCGT
TAGATCAATCACAGATGGCTAGGATTAGAATGAAGAAAACATTTCGTCTAGGGATAATCTCGTA
GGTATATCGACGGTTGTATGATTGAGAGCAGATCGCGGGGTTTTAAAATCTGGACCAAAACTTT
TAGATCCAGCGGTCCATAGAAGCCCATACCCCCTTCACCTGACAATTTTGTAAAAGAGACCCTG
CACTTCCCTCTAATAAACCCGCCATCCTCCTGTATAGTAAAATTATTACGAAGGAGTCCTAGAT
TTCATAACTTAGACCCTGAGGTTTCAACAAATTGGACCTGCCATCCATTATATAGTTAAATAAA
TATAAATAAAAAACAGGAAATTGCAGAATAATCTTCGAAAATTGTTTTTACAGACAAAATAATT
ATTAAAACACCTAGAATCTTAGAAAATCCATAACTTACTCATCCTAAATCCGATTTTAGTTGTT
CTTAAACCTACGAATCCGTAGCGACGCATAGAATATTATTGTGTGGTTTGTTCTCATGTTTTGG
TGTAGTGCTATCATATCCATTATTTGTTTATTTGTATATATTGCTACGAATAGAAGCGAGATTA
CGAGGCACCTCAAGCACAACTTGAAGAAGTACCTGGAGTTGCACCAAAAAGGCAAGTTGTACCC
TTGATCACATTCTTTTACCTAATACTGTTTCTGTTAATCATCGTGACATGCTTTGATTAATTTG
ATGGGACCTTATAGGTAACCCTAGTTTTGTCTACCATATACCTTGCATACAAATGAACTATTAG
GTAGTCTTGCTATTGCTCTACTTGGTTTTTGGGAATAATATATATCTGAATTATGATTATGCTT
TATCATTGTTGATGGATTATTTATTGTTAATGATAAGATTATTGTGTTAATTCGAATAAGGAGC
TTAACCTGAGATAACAGTGCTACCACAAGGGTGGTATGGGACACCCTTGGCTGACTAATTAGAA
AAGCTGGTGGAGGACTATCTTACCCAAAGGGGGCAACCGCGGTGTGAGGAGCTGCCAGTATAGG
GAGGTTCTCGTTCGATCATGCTGCGATGGCTTTTCGGACGAGGGATTCCTATGTCGCCCCCTTC
TTGCAGAAACCATAACGGGTTTTCTGAAGCTAGTGGAACATTGTAAAGGCCCCCCTTCTCGCAA
AAACCATAGCGGGTTTTCTGAAGCTAATGAAACTTTGTAAAGGCCTCGTAGTGGGACCTTGCCT
CGTCTCCTCGGTAGAGATGAATGGGACTCGAGACCCCTTGTGATTTATTATTTATGGAAATTAA
CTTAATTTGTCATTTGCATTGCATTGTGTGATTTATTATTAATTGTGATCAGTTATTTAATTGT
GTTGGCATACACTTATACTTAGTAACGGCTAATAAATTTTGACCAACTTATTAAAAGCAATGCT
CAGCCTTAACCATTTTTGTTGATAAGCCTTTACACTACACATGAGCCCCCACCATAAGTGAGCT
CATGCACATTATTCCCTACACGTGTTGAGCGATGAACATATGTGAGCTCACTCTTGCTATAATC
ACACCAAGAGAAGAGCAGGTACCACCGGAGGAGCACTACTACGATGAGTTCGATGAGATCTATG
TGTTGTCTCCCAGACAACTATGGTGTCATGGAGAGAGTTATCTTAGTTCGAGTTATTTTACTAT
CATATATTTTGTTAGACATTCTCGTTATATAATAAAGTTGATAACATTTGTCTCTATACATCGA
GTCATTATATGTGTGAATCTTTATTTAGCGCACATATGAGATGCGCCTAGGTCTACCCTTAAAT
CCAGGTGTGACATGAAGCCTTTACAAAGGGGAAAATATCTTGCGCAATCAATCATGTTGGTGCA
ATCATGAAGAGATATGGCGCATCCAATCAAAATCCAACAATGACTGCTATTTTAGGTGGAAAGG
GTTAAATATAAAATAGGTACTAGGTTTTAAGTGGAAGGGGTTAAATATAAAATAGCAGAAAACA
TTGGATTTTAACTATATGCACCAGATCACTTGATTGCACGATTAAACCAATATGATTGATTCAC
AAGATATGTTCCATTCACAACGACACATAAGATAACTTTAAGATCACACAAATCTTATAATGTT
GCTAGTGCAAGAATGTGAGAATTTTGAACATCACATAAATAATTATTTCTAAATATAATCGTAA
GGGAATAGAAAGTCTGATGTAACTATATAAACACCACCAAAAAGGGTTTCGATTATTTATTGTG
TTGGTCCCTTGGTGAATTTGGAAGCCTAGGGATAGGTGTGCTTTTTAAGGGCTTCTCCTTATTC
TGGCCTCTTAGTACAAGAGAATAAAGATGAGGCAAAAATGTTGTGTGGCAGGGGCCAAACGCCT
CAGGCACATTTGGCCATAGTCTGATTGTATGGATGACTTGATGGTCGCCACTAGTATTCTTCGG
CAAGTGATGCTTGCAAAGCCTTTAGGGCTTGTATGAGTCTCTTTTGACTCCCTCTTTTTTTAAT
ATAATAATACACCGCTGACCGCTCTCCTATGTGTTTGAGAAGAAATGGTGATGATGAGGCAAAT
TATATTACTAAATACAGCACCTTCACATTTTTTAACGCCGTCCCCTCGGAAACCAGCTGGGCAC
AGGCATTTCCCATCTCCAGATTCCTGGAAAGAAAAAAAAGTTGGGAAGCAACAGACAGATATTC
AGTAATAAAGCCATAGATCATGTAATAAAATCCTAAACCTACCTGGCAAGCAGAGAATGTTTTT
CCGTTGCGAGTTTCATGCCAACATCCTCCATGGTTTATCAAGCATTTTCCTGGTCCAGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.018443379
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b