Detail information of BGIOSGA032304_circ_g.1


General Information
CircRNA Name BGIOSGA032304_circ_g.1
ID in PlantcircBase osi_circ_008756
Alias Chr09:19339634_19340367(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 2247654-2248387  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA032304
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA032304-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAATTCAGATTACATTATTTTCACTAATGGTAGACATTTACCAATATAGTTAGCTTCTACATC
AACGATGCCAAGGATCAAGAAGTAGTACCATTTAATcctcggtaacattactgacagcataaag
catggccccagaaatgacaaacaaatcacctttcaaggggttgggtccttctgcaagacactcc
attgtgta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCGGTAACATTACTGACAGCATAAAGCATGGCCCCAGAAATGACAAACAAATCACCTTTCAA
GGGGTTGGGTCCTTCTGCAAGACACTCCATTGTGTAAGGTCAACATGATTTACTTGTTATTCTT
TTACTGACAAGTGCAAAATACTGTATTTTCTTTATAATCTATTTGCCACATTTCAGAAGAGCTT
TGTGCCTTTGTGCTGAGAATCAAGTACACATTGCAAAGACTACATGAAACAGAGCAATGCAGCA
CCAAAATAAAACGCAGAAACTGAACAGATAACGGCATGCCAAGCAGATGTATATAAGTGTATAA
TTGTGTGAGTTGAGTAAACTTTCATTGGAATCATGTTCTTACTTGCTCTATCAGAGGCATGGAC
ATCAGAAAATACTACCAATATAATGCCAGCCACACAAATCACAACACCGATGAACTTCCTCAAT
CCATACTTTGTCTTCAAGAAGACCCAAGTGAGGAGAATGACACACGGGATCGCCCAGCAATCGA
TGAGCATCACACTCGTTAAGGATGTATACTGATAAGCCTTCACAACTGTGTGAACAAATACAAG
TCAAGTTTAGAATCTTCACATGAAGTTACTAACTAAAAAGAAGCTCCAATCTCAGTAAGAAATT
CAGATTACATTATTTTCACTAATGGTAGACATTTACCAATATAGTTAGCTTCTACATCAACGAT
GCCAAGGATCAAGAAGTAGTACCATTTAAT
Conservation Information
Conserved circRNAs osa_circ_039810
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021