Detail information of 4_circ_ag.9


General Information
CircRNA Name 4_circ_ag.9
ID in PlantcircBase ath_circ_030354
Alias NA
Organism Arabidpsis thaliana
Position chr4: 6885076-6888488  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 4_circ_ag.7 4_circ_ag.8 AT4G11320_circ_g.1 AT4G11320_circ_g.2 AT4G11320_circ_g.3 AT4G11320_circ_g.4 AT4G11320_circ_g.5 AT4G11320_circ_g.6
Support reads 2
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCTGCAAACGATGAAGCCGCTCTCATGAAAGCGGTTGCTCACCAGCCTGTGACTGCCGTTGTC
GATTCCAGCAGCCGAGAGTTTCAGCTTTATGAATCGggagtgtttgatggctcgtgtggaacaa
acctaaaccatggagttgttgtggtcgggtatggaactgagaatggtcgtgactactggctcgt
gaaaaact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGTGTTTGATGGCTCGTGTGGAACAAACCTAAACCATGGAGTTGTTGTGGTCGGGTATGGAA
CTGAGAATGGTCGTGACTACTGGCTCGTGAAAAACTCTAGGGGCATTACATGGGGAGAAGCTGG
CTACATGAAGATGGCTCGAAACATTGCCAATCCAAGAGGCTTATGTGGCATTGCAATGCGAGCT
TCATACCCTCTAAAGAACTCCTTTTCTACCGATAAAAGCTCCATCGCCTAATAAAATGAGCTAA
ATGTATGTTATGCAAAGGATCCAGTGAGCCAGCAACCTATTCGATTGTGAAATGAAAAATAATG
TAGTCGATGGGTTTTGTTTTGTAATATATTTTGGATTTGTATGGAGGGCAATGTTTGAAGTTTG
TATAATATTTATGGATATTTCGTTAGGCTCTAATTATGAATGCCTTCTTTTTAGGAAGAAATGC
CAAAAATGATAATTGAACTACATTTTTGCCCCTAATAAAAATATTACATTTGAGACGGACGAGA
TTGATTAGCGATTCTACCATATTTGCAACACCCGATTTTTATCAAAAAATGTTACATGCAGAAA
GGTTTAAAATAGTAATAATTATGTTTTTATAAAAAGAAGTAAAATAATACCAAAAAAAAAGTTA
TGCATTTTTTTTCATAGAAAAATTCATAATTAAGTGTATTGAAATTAAATAATTTTATGAAAAA
TTGTGTTATTGAAGACTACAAAAGAATTGTAAGGATATAGAGGATACACAACACAATGATTTTG
TCTAGAACGCGCCAAACAAACTTTTTTACTTATTCTTATTGATAATAAATCTTTTACAAAAATC
AATTATCTTAGAAATAATTTGACCTATTCTACATGAATGATCAACTCCGACTAAGAAGAAATGT
ATGCCTAATTCTCTCTTCTGTATTTTCTACCACACATCTGTGAAAACCAAGAGAATTACAAACA
CTCACATTTTAGGCTTTTGCTAGGCTTTGAAGATAACACACGTATACCAATATTCTAGAATGCT
TAGGTGGCTCAATGCAAACTCCATAATATTTATACTATTTCCAGAACCCTAACCCTTAGGATCT
CCGAGAATCAATAAGCGGGATCTTCTTTGATCTTCAAGCTTATCTCTTTCCTTATTTGTTGAGA
AAAATATTCACCAACTTAATCGACTTTCGTCTTTGATCTCCACGCTAAGTCAGCAAAGCTCTTC
GGCTCGTCACATCAACCAATTCATCTCTGCCATGTCAGCTTATGCGTCTATGTCAGCAACTCAA
CCGTCTGATGTGATCTGATGCAGTTTCCTGATATACAACAATTTCCTAAAATACAACAGGTCTC
TGATGTCCATCAACTCGTTATTGTTAGAATCTACATCTTCAAAAATTCCTTGTGAACTGTAGAG
TCATTCGTCGCGTATGAAATTTGGCGTAAAAAGGGAGACTAATAGGCAGAATGTGAGTATGGGA
GGAAAAAGATGGAGGTCGCCAGTACATTACAAGTGTTCATAAGGTCACACTATTGGGAGTAACG
GGTTTTGGTGCAACAAAGATAACTATTTAAAACTGATTTTTTAATATTGAGCATGTACAAAAAA
ACACGGAAAAAGATTTTGTGGTGTTCTAGCGGATCACTTGACAAGTATATATGCAAGCTTTTGC
GCCATAATGGTTTTAGATGTACTTTAAAATTCTGCCATATTATGTTATATATATGAGTGTTTTT
TGTTCCATGATCTAAATGATGACATTTTTTTTTTTTTTTATCTAATGCCTATCTTTAAAATATT
TTCTGGATCCACCACTAACCTCAATTGCATTCAAAAACGACCAAATTGGTGTATCATCTTCGGA
AAACACCTAAAATATATAGAATATCGGTTCAAAAGAATGACCTGGACCTCTTTTTTACTCATTC
ACCCAAGCGAACTTTGGGCATGTTTCTATACCCAATCGAAAATATATCGAACAGCCAAAAAAAC
GAATTTTTAGATACAACATATATTTGAAAAAGTTCTTATTTACAAATCATTGGTGAAAAATTTA
GACACTACTCGACACAAATGCATGAGTAGGTTTACCCATTTGTTCACACCAATGGACACGTTAT
AAATAACAATTTTAATATATCTGAGCGCTGAGTACTATAAATACTGTCATGTGTTAGCCAAAAA
GAACATAACACAAAATCCTCTTCTCTTCTTTAATAACTTTTAGAAACACAAATAAAAGTTTAAT
TACTTTTAAGCCCAACAAAAATGGGTTATGCTAAATCAGCCATGCTGATCTTCTTACTAGCATT
GGTCATCGCATCTTGTGCCACGGCCATGGACATGTCCGTTGTTTCCTCCAACGATAACCACCAC
GTGACCGCCGGTCCCGGCCGCCGTCAGGGTATTTTCGACGCTGAAGCCACCTTGATGTTCGAGT
CATGGATGGTCAAACATGGGAAAGTGTACGACTCCGTTGCCGAGAAGGAACGGCGTTTAACTAT
TTTTGAGGACAACCTCCGTTTTATCACTAACCGGAACGCTGAGAATCTCAGTTACCGGCTTGGT
TTGAATCGGTTTGCGGATTTATCTCTCCATGAATACGGAGAAATTTGCCATGGGGCTGATCCAA
GACCTCCTAGGAACCACGTCTTCATGACTAGCAGCAACCGATACAAGACTAGTGATGGTGATGT
TCTTCCTAAGTCCGTTGACTGGAGAAACGAAGGCGCAGTGACTGAAGTCAAAGATCAAGGCCTT
TGCAGTAAGTGTACTCTGGTCTAACTATTCTTTATTTATTTTAATTATAGTAAATAGTAGAATT
ATTGCAAATTTATTTTAAAACACCTTTTAATAAAAAAAAATATACAAGTTTTTGATGCATGTTT
TTTTCTGGTGTGAAGGGAGTTGTTGGGCTTTCTCCACTGTGGGAGCAGTGGAAGGCTTAAACAA
GATTGTGACTGGAGAGCTAGTAACTTTGTCTGAGCAAGATTTGATCAATTGTAACAAAGAAAAC
AATGGTTGCGGAGGAGGCAAAGTCGAGACAGCCTATGAGTTCATCATGAACAATGGTGGTCTTG
GTACCGACAACGATTATCCTTACAAAGCTCTCAATGGAGTCTGCGAAGGCCGCCTCAAGGTATG
TACAATTAGGATCATATTTATAAATAATGTCTATAAGACTAGATCAACAGAAAAAATGAGAGAA
TAAGTTTTTATTTTATTTTTATTTTTTGGGTTCAAAAACGAGAATAACTTTCGAACTTAAATAT
TTGTGTAGGAAGACAACAAGAATGTTATGATTGATGGGTATGAGAATTTGCCTGCAAACGATGA
AGCCGCTCTCATGAAAGCGGTTGCTCACCAGCCTGTGACTGCCGTTGTCGATTCCAGCAGCCGA
GAGTTTCAGCTTTATGAATCG
Conservation Information
Conserved circRNAs NA
PMCS 0.57546343
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017