Detail information of BGIOSGA016408_circ_g.2


General Information
CircRNA Name BGIOSGA016408_circ_g.2
ID in PlantcircBase osi_circ_014350
Alias Chr04:21390198_21393133(MH63RS2), Chr04:21390198_21393133(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 18750451-18753386  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA016408
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016408_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016408-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAAGAAGCTGTTGGTTGTTCTGAGTAACATTGGATATTGTAAAGCTGAACTTTCAGATGAACT
GTATACCAAATACAGGCACATTTGGTCCCCAGTCAGggtggggatactaaaacgtgtacttgag
gaagtggaaaaggtaatgcaggaattcagaggcatgctttacaagtcaatggaggatcctcatc
ttgacctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGGGGATACTAAAACGTGTACTTGAGGAAGTGGAAAAGGTAATGCAGGAATTCAGAGGCATG
CTTTACAAGTCAATGGAGGATCCTCATCTTGACCTCGCTGAGGTTAGTTGACTTTCCAATATTC
AATGTAGAATACTTGAAGTTCCTTACTAGTGTTGATAGTCAAATACTCAAATATCACTCAACTC
GCTAATTTTGATTATAGAAATTTTGGTAGTTACATGAGGAAGTTACTTGATACCTACACGTAGG
ATGCTGCTGGCTGTAAACTGAACTACTGATCGCTAGTTGTTTATATTTATGCTATTTAGATACA
ATATGATTCAGTTCTATCTGCCTCCTGATTTTCTTGCCAACTGCCAGCTTGAGAACATTGTTCG
GCTACTGTTGGAGTTGGAACCTGAGACCGATCCAGTGTGGCATTATCTTAACATTCAGGTTAAC
GCTCTTGACCAAAATTATCTGTGCTTTATGTCATGGCCATACTTGCTTGTACCACTACTTATAT
GTTCTATCTTCATATCTTCTCAGAATAGCAGGATCCATGGATTGTTTGAAAAATGCACCTTAGA
TCATGAAGCACGAATGGAGGTTCTACAGAATAAAATTCGTGAGAAAATACTATCTGATGCAAAA
TGGAGGCAATTGCAACAAGATTCAAATAAATCAGTGAGTAGTTTGGGTTCAGCATAGCACTCAT
TTGATCATCTACTATGATGCTACAAATTTGCATGGTATTTGCACCTTGTCTTAGTTAACATGGC
ACATGTTCCTTATGTTTGCATAGTTGGAAGTTGATTCTGCTACCGGTGACTCTTTTCAAGATGA
TCAACTGTCAACAAATATTATGGCTGATGAAGCTGATAGCTTAAGGGCAGCCTACATTCGTAGG
TTAACTGCTGTACTTATCCAGCATGTTCCTGCATTCTGGAGATTAGCTTTATCTGTCTTCAGTG
GAAAATTTGCAAAGGTATGAATGGGTTTAGCTTTAACATTTGTCAGATATAGTTAAGATCTTGC
TCCAAAACATATGAATACATATGAACCTTTTCATCCCACCTCTTCTCATAGATTGCAATGCGTA
TGAAATAAGCGCCTTTTATATATTTTTTTTTCATATAGTGTATTCTGAAATACTGTGCCTGCTT
CATGTCACCTCATGAAAAATGAGAACCGCCATCTTTTTATGATTTATGAGAAAGACTTACATGA
ATTTGTTAACCGTATCTATTGTTTACAGGCAGCTGCGGGGAATGTACTTTCTGATTCTGATATG
AATACAAAACAGAGTGTAAATAAGACTGATGATAAAGGTGGAGAAGCAAAGTACACAAACCATA
CTCTTGATGAAGTTGCTAGTATGGTTCGTGCTACTGTATCTGCTTTTGACACCAAGGTAGAGTT
ACTGCATGTTTTGCAATTCTAACATTTAATCAGAACCCTTAGTGGTTTGATTGTATTTGTTACA
ATTAAGCATGTTTTTATATCAACAGGTTCAGAATACTTTCCGTGATTTTGAGGAATGTAACATT
CTTCGCCCGTTCATGGGTGATACTATAAAAGAAATAGCTAAGGCTTGCCTTACTCTTGAAGGGA
AGGATTCATCTCCAACTGCTGGTATATTTTATTGCCCTTTTTTAGAACTGTAGATACACTTAAC
TTCTTTTGTATACTGAATGTGGTTAACAATAATTCCAGTGAAAATGTTGCGGGCCCTTCATTAT
GAAATAACGAAGCTTTACATTCTACGACTTTGTTCATGGATGCGGGCAACAACTAAGGAGATAT
CGAAATATGAGACCTGGTTTACTTTAACCACCCTTGAGAGGAACAAATCTCTATATGCAATTTC
AAGCATGCCCTTGGAGTTCCGTGATATCATAGTTTCGGCAATGGACCGCATTGATTTGTAAGCA
TATTTTTTGTTCAATATTGCACTTTCTCTGATGATATCTTATGCATGCTGTAGGTATAATTGTT
TGTGCTATTAATGGGTAGTTTATGATTTCAATACTGTCTGTGGAATCTAATAATGGGGAATTGG
GGATATTTAGTACAGTAATATTTTGCCATTGTGTTAGTCAAAAATAGATTAGATACATGCTTTT
GAAAAGCCATGGCAATGACAAACAGACCTAAGCATAAGATTTGTCCTAAAGTAATTGTTAGGTG
TGCTTCACATAATGAATACTTCTAGTTTGTTAGTTCATATCATATCATGGCTATGAAATCAGTT
CTTCGTTGTGATTTATAATGGTTTGCTTACAATCCTATTCACTGTAAGAGAACTGAATGTTGTT
TTCGACTTGTTAATAAAAGAATGATAATAAATATCAAATTGTATATTGAAATAACTGCATTTGA
AGTGTGCATTTTTACATTCAAGATCAATCTAAGTCTTGAGGTGACTAGTTTTATAACCAGCCAT
CAATATCGTGCCTTCATTTTTTATGGTTTCGAACTGCCTCCTGATCTATGCTTTTCTATTGCAG
TATGGTTCTTAATCTGAGGAGTGAGACTGCCAAGTCTTACGATATTTCTCAACACCTCCATGAA
ATTCATGAATCTGTCAGACTTGCATTTCTAAATTCTTTTCTGGATTTTGCTGGTATGGATTTTC
TTTGTAACGTAACTACTGAAGGTCTTACAAATTTTGTATCTAATTGTTGCATCATCCATTATTG
ACAAGCTGTGTTAGTGCATCAGGTTATCTGGAGAGGTTTGGAGGGGAACTAGCTCAGAACAGAT
CAAATAAAGAAAACAACCATACCCAAAATGGATATGTAAATGGTACTAACAGTGAAACATCTGC
TGGCATGGATGGGGACTTGTACAAGAAGCTGTTGGTTGTTCTGAGTAACATTGGATATTGTAAA
GCTGAACTTTCAGATGAACTGTATACCAAATACAGGCACATTTGGTCCCCAGTCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021