Detail information of Zm00001d027259_circ_g.1


General Information
CircRNA Name Zm00001d027259_circ_g.1
ID in PlantcircBase zma_circ_006332
Alias zma_circ_0000695
Organism Zea mays
Position chr1: 697140-701105  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d027259
Parent gene annotation tRNA/rRNA methyltransferase (SpoU) family protein
Parent gene strand -
Alternative splicing Zm00001d027259_circ_g.2
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d027259_T032:4
Zm00001d027259_T040:4
Zm00001d027259_T021:4
Zm00001d027259_T019:4
Zm00001d027259_T016:4
Zm00001d027259_T024:4
Zm00001d027259_T009:4
Zm00001d027259_T056:4
Zm00001d027259_T043:4
Zm00001d027259_T002:4
Zm00001d027259_T003:4
Zm00001d027259_T058:4
Zm00001d027259_T025:4
Zm00001d027259_T035:4
Zm00001d027259_T067:4
Zm00001d027259_T048:4
Zm00001d027259_T060:4
Zm00001d027259_T042:4
Zm00001d027259_T027:4
Zm00001d027259_T038:4
Zm00001d027259_T029:4
Zm00001d027259_T010:4
Zm00001d027259_T049:2
Zm00001d027259_T006:4
Zm00001d027259_T011:4
Zm00001d027259_T007:4
Zm00001d027259_T064:4
Zm00001d027259_T062:4
Zm00001d027259_T015:4
Zm00001d027259_T004:4
Zm00001d027259_T008:4
Zm00001d027259_T055:4
Zm00001d027259_T045:4
Zm00001d027259_T046:4
Zm00001d027259_T051:3
Zm00001d027259_T034:4
Zm00001d027259_T053:4
Zm00001d027259_T013:4
Zm00001d027259_T018:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAGTCCCATAGCACGGAAAATGCAGAAGAAACAGAATCATCGGAGTTGTAAGGATTACACCA
TGAGGCAACAGAACTAACACATCGCATTGACCAAATctcatagctgatgcctaaagaggaaaaa
attgtgttgccctcattcaggtgtagcaatctcaaaacagatctcacacatctcaagatagata
agacagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCATAGCTGATGCCTAAAGAGGAAAAAATTGTGTTGCCCTCATTCAGGTGTAGCAATCTCAAA
ACAGATCTCACACATCTCAAGATAGATAAGACAGAATTTTCACCAGTGTTTTCAAGGCTGCAAA
GATTAAGAAAAGAAATGAAGTACAAATAAAATCAGCGCATTTCAGGATAATCTAAGTTAAAGGA
TTAGCATAAAAGAAAAACTTTGAATGATAAGTAGATAGTTGTGTTCCAATACAGGATCAATTTG
CATTAGAAAAACAAATCAATATTTTGCATTAGCATTTCTAGTTGCCCCTTCAAGTAAATAGTTG
TTGGCTCCGATTTGGGGGCAAACACTAGGGGTGAACCGCCTAGCGGTGCTCTCTGCGGGAGCGC
TCCACGGCCGAGGGTCGGACGGTCCGTGACCTCGCTGGAAGAGCGGCTCCTCTCTACGCCGCAA
CGGACGGTCTGTGACAGCGCAGAGTCGTCTTCTTCCTCGGAAAACCCTAGAACTCGTCTCCCAG
GAGAGACTCCGTCGGAGAGGAGAGTTCCAGGGGTGCCCCGGGGTCGGCAGGCCAGCCGGGACGT
CCCTAGACGACGTAGAGTCAAAGAGGGATGAAGATTTGGGATTGGGGAAAAGCTAAACTAGGTC
TGAATTACTCCTCCTAATGCGATGAAGAACGAAGCAAATAAAGTAGATTGTATTGATTTGGATC
AATTGTGTTGTATTCCAATCGACTGTACCCCTTCATATATATAGTGGGAGTTCCGGACCCATTC
CTAGGCGTAGCTCAACATATTCTCGTGCAGTTAGTTGGATAAACACGCACGGGACAAGGACTCG
CCCGAGTTAATCTGATCGCGAACTCCAGGCTATACCTGCGGACCGTCCGCGGCGCAGACCGTCC
GGCCTCTTTTGGTGCTCAACAATAGTATTGAGTTCATATGTTCTAGAATGAACAAAAAGGGTAT
CCAGTTGACATAGGTGTTAGAATACCCGATTAGGGTTTGGGGTTCTGCCCGTGTAATTACTGTC
TCGCCCCTCTGTAATGGGCCTGCCCAGTTACTCCAGTCTATTTAATAGATTGCCCAACCCCTGT
TAGGGTTAGGGTTTCCAATATGGTATAGAGCCAAAAAAATTATCTCCCAGCCGCCACCTCCCCT
GTCCAGCCGCCGGTGCTTCCCTCCCCTGCGCCGCCGGCGCCCCCCATCTGCTCCCTGGCAAAAA
CCGCCGCCGCCCCTGCCTTCTCCTCCCTTCCCTGAGCCGCAGCAGTCGATCGTGAAGGTGACAG
AGCCCTTCTTCTTGCCGCCGCCGGCCGCGCCACCCTTCGCCCCAACCACCGCGCCGCGCGCCAT
CTCCCCTCCTCCGCCTCGCTCGGCTCGTCTGCGTGCCCCGCTGCTTCGCTGGTAACAGCCGCCG
CCGCCCCTGCCTCCTCCTCCCTCCTCCCTTCCCTGAGCCGCAGGACCCGACGCCCTGCCCGACC
GACTGCCTCGACCACACCTGGGACCTGGTGTCGTGTCCACCAGGCACCAACGTGGTCACCAGCA
AGTGGCTATTTCACCACAAGCTGACCTCGGACGGCTCCCTCGACCGCTGCAAGGCCCGTTAGGT
CCTTTGGGGCTTCACCCAGCGCCCTAGAGTAGACTACGACGAGACCTTCAGCCCCGTCGTCAAA
TTCGCCACTGTCCGCGCCGTCCTCTCCCTCGCCCTCTCCCGCGACTGGGCGATCCATCAGCTCG
ACGTCAAGAATGCCTTCCTCCATGGCACTCTGACGGAGACTGTTTACTGCAGCCAGCCCACCGG
CTTCGTCGACGCCGATCGTCCGGATCTGGTCTGCCGGCTGAACCGATCCCTGTACGGCCTCAAG
CAGACGCCGCGGGCATGGTACAGTCGCTTCGCCTCCTACTTGGCCTCCATCGGCTTCGTCGAGG
CCAAGTCGGACACGCCCCTGTTCATCTACCGGCGTGGCGACGACACCGTCTACCTCCTGCTCTA
CGTCGACGACATTGTACTCACGGCATCCACCGCCGACCTTCTACAGCGCACGATTGTCGCCCTT
CAGCGGGAGTTCGCGATGAAGGACCTGAGGCCCCTACACCACTTCCTCGGCATCACCGCCGAGC
GCCGGCCTCAGGGTCTCTTCCTCCACCAGCGCTAGTACGCCATCGACATCCTGGAGCGGGCTGG
CATGTCTGACTGCAAGGCCTGCTCCACGCCTATCGACACTCAGGCAAAGCTCTCTGAGGACGAC
GGGCCTCCGGTCGCCGACGCGACGTCATACCGGAGCCTGACCGGCGCGCTCCAGTACCTCACCT
TCTCCAGGCCCGACATCGCCTAAGCGGTCCAGCAGGTGTGCCTACATATGCACACTCCGCGGGA
GCCCCACCTCACCGCTCTCAAGCGGATACTGCGCTACCTCCGCGGCTCCCTCAACTACGGCCTC
CTACTTCGACCATCCCCGACGTCGGAGCTCGTGGAATACACCGACGCTGACTGGGCTGGCTGTC
CCGACACGCGCCGGTCCACCTCCGGTTACGTCGTGTTCCTGGGCGCCAACCTCGTCTCTTGGGC
CGCCAAACGACAGCCCGTCGTCTCTCGCTCCAGCGCTGAGGCCGAGTACCGTGTCGTGGCCAAC
GGCGTGGCAGAGGCCTCCTGGCTGCGGCAACTCCTTCACGAGCTCCACAGTCCCCTTCAGCGCG
CCACCCTCGTCTACTGCGACAACGTCAGCGCGGTCTACCTCTCCACCAATCCCGTGCAGCATCA
GCGCACGAAGCACGTGGAGATCGACCTGCACTTCGTCCGCGAGAATGTCGCTGCCGGTGACGTT
CGGGTTCTCAGCGTCCCCACCACGTTGCAGTTCGCTGACATCTTCACCAAGGGGTTCCCGTCGA
GTGTATTTTTAGACTTCCGATCCAGTCTCAGCATCTGTACATGATAGAGTTGTGACTGCGGAGG
GGTGTTAGAATACCCGATTAGGGTTTGGGGTTCTCCCTGTGTAATTACTGTCTCGCCCCTCTGT
AATGGGCCTGGCCCAGTTACTCCAGTCTATTTAATAGATTGCCCAACCCCTGTTAGGGTTAGGG
TTTCCAATAATAGGAAAGCTACAAATTTTTAACCAAGCTAACAGAAATAATACAAGAAACTTGC
AGCTTTCAATTATGCAAGGCTCCCCAAATAAACAGATAACAGAGTACTGAAATGAGATTGGATG
TCATAATTAATGTAAATTTAAGAAATCATAGGACTAAAATGTAACACAGTCGTACCAGGCTCAC
CTTTCGATAATATCAAGAAAAATGCATCGGAGGGTTGAATCAGAAAATAAAGGTTCCAACCTCT
TCATTTGAGATTCATTGTCACTATAGCAGCTTGAAATAGATAGAAGAGAATCCATACAAAGCCA
CTGAAATAAAAATTAAGAATTAGGAGCCATCCAAACTGACTTCTTTGTGTACTGCAAAAAGAGG
CAAGATATTATCCTAACCTTCCAAGTCATCAAAACAGCTCTTCTGCTTCGCGTCAGAGTTCCCT
CTGTAAGAAGATGGTTGATGTTGTCAAGGAAAGTGGTGACCAAAATGTCCAATGAAAACTTGTG
GGCTTGATCTGTCTGCTTCGCTTCCACAAAATCCAAAAACTGAGTACTGGAAGCAGTAGATAGA
ACTGCCAGAACATAGGCAAGAGCTTCATAAGCTGCCAGGTGAAGTTCAGCTCCGATCTTGTACA
GGGGAAAAAAAGAGAAAGACTGACTTTAGAATTTATGTAAAGAAAGCTAACAGAAAGGACAATG
AAAAAGAATAATTAAGTAAATCAGTAAAAAGTTGTTTAAAATAGCAACATACCTCATTGGCAAT
AGTGGAGTGATGGGTAACATTCAAATAGAAGTCCCATAGCACGGAAAATGCAGAAGAAACAGAA
TCATCGGAGTTGTAAGGATTACACCATGAGGCAACAGAACTAACACATCGCATTGACCAAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.062938601
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b