Detail information of BGIOSGA031779_circ_g.1


General Information
CircRNA Name BGIOSGA031779_circ_g.1
ID in PlantcircBase osi_circ_008457
Alias Chr10:18391640_18393378(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15276896-15278634  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA031779
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA031779-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCCATCCAACCTTGGCCTCGTTGTGGCAATGCCTGCAGCCGAACACCTCGCCGCAGCACGGC
GCCCTGATCCTGCATCCCCTCGTGTAATGCTCGCAGccgcatttgtcgcagtgaaagaacttat
ccacaccaccagttctggaaaaaaaatgggcatatccaaaattgatcaaactgaataaaatagt
aaatgcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGCATTTGTCGCAGTGAAAGAACTTATCCACACCACCAGTTCTGGAAAAAAAATGGGCATATC
CAAAATTGATCAAACTGAATAAAATAGTAAATGCAGAAAATAATTCATAGAGATAGATTTAGGA
CTTGCCTGCATATGCCGCATCCATCGCAGTGATACTGGTTCTTTGAGACCTGGAACAAACCAAA
CAAATATGTTAGTCAGGTTGTTAAGCATCATCATACATTTATGAACCATACTTGCCACATTAGA
AACTTAGATGTAACGTAGAATCATCATTTGTAATCCAAACATGCTTACATCATCATCAAAGAAG
TTGCATTTTTCGCAGAAGTATTTCCCCATGCATGCCCCACAACCAGAACAGTACTGTTGTACCT
GTCGATCAAAGTGAACAATTTTCATGTGATCAGTACAGAAAAAAAAAAGTTAGCACACTCCAGA
AATTCTACTGTTGTACACTCGAGAAATTCTATTGCACTTTTCTATAAACTACTTACATCCTGTT
CTTTGTCGCAGAGAGAGCAGATAACCTGTGATACACCATAAAGTAAAACAGTTTCAGTAACTCC
ACAATCTGGTTAAGAAAGTTAGTGATAATGACAAAAGCGTAACAGCCATTGAAATTCTTATCCA
CTAGATTCCCCCAGGAAATTAGTGCTGTGATAATTGCACAATCAGTTTGACTATTTGAGGCACT
GTTAGCTATGGACACCTGTTGGGCCACATAAACGAATCAATCATGTGCTGCTACTCAATTATTC
AGGAATCAATCAGCTGACCGCACTCAAGTTAATCTTGGCTGATGGTGAGACATGCCTTTGTCAT
TTCCCTTTCCTCCTCTGCCGTCATCCTTCTAGTGACATTGTCACATGGAGATAAGCAAGCAAGC
AAGCAATCAATCATGTGGACCAGACAATGGTCACTAGTAGCAGAAACTAACCTAGTGTGCAAGT
TGAGTTGTGGAATGGAAAATATCAAGAAGAATCTATCCCCATGGAGCACTAAGACAATTAGACA
ACCTTATCTGAAGAAGGGGGGGAGAAGGAAAGGAAAGGAAAAAAAAAATTCTTGGGATGGGGGC
ATTCTTGGCCACTTCATGGCAGGGGTCCCAAACATCATTGTCCAGGGCTCCAGAGGCATGCATC
AGCATCAGACTGAAATGGCAATTACTAATCGGATTTTGAATTTTGGACTGAAGAAATTGATAGG
TTTGTGAAAACTGAGGTATGATCTCTCCGGCGACACGCCATCAAATATTGACCGCAGATTTTTT
TCTTTTCTTTTTGTCTATCAGGCGTTGTGTGTCCAAGCAAAATTCAGATAAATTTGACACGGAT
TATATCGGATGAAATTGGGTATGACAAGCATCAAAGCGTACACGAATTGAAAACAAAAGGGAAA
GCTGATGCTAAAATCAAACAGAAGAGTGAGAACAAACAAACACCTTCTTGATTTCGTGGCGGGG
GATCTCGTGACGGTCATTGAGATGGATCTCGAGCGAATTCTGCAGCAAATAATCAAAAGCCAAT
ATCAGTACCGTTTGAACGATTTTCCTCTCCTCAATAGGAGCCAACAAAAAAAGAAAAACAGAAT
CAAAATTCAAAAGCGAAATGGATTGGAAGAAGAGAGAAGAATCCATCCAACCTTGGCCTCGTTG
TGGCAATGCCTGCAGCCGAACACCTCGCCGCAGCACGGCGCCCTGATCCTGCATCCCCTCGTGT
AATGCTCGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021