Detail information of BGIOSGA020897_circ_g.2


General Information
CircRNA Name BGIOSGA020897_circ_g.2
ID in PlantcircBase osi_circ_006833
Alias 6:25478665|25479418
Organism Oryza sativa ssp. indica
Position chr6: 25478665-25479418  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA020897
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA020897_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA020897-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTAGGAAATTGGTAGAATCAACGCTGATCCCCATGGGGCAGCAGAAATGGTACCAAGAGGGTC
GGTTTTCTCAGGGAGAGGGAAGCCACCGGTGGTGATcttgaggacgttgttgttcacatctgct
ttgccactttctatctctgcaatttcttccctgattgagattagagcatcacagaacctatcga
gttcggcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGAGGACGTTGTTGTTCACATCTGCTTTGCCACTTTCTATCTCTGCAATTTCTTCCCTGATT
GAGATTAGAGCATCACAGAACCTATCGAGTTCGGCCTGCGAGATAATTGATGTGACATTAAGCT
CATATAAAAGAATGGTTGGTACAATGCTAAGGAATATAGTATGTGTTTTAGTGTTTTACCTTGC
TTTCACTTTCAGTTGGTTCAATCATAAGTGTGCCTGGAACAGGCCATGACATAGTAGGTGCATG
GAATCCATAGTCCATCAAACGCTTTGCAACATCCTCTGGCTCTATACCAGCAGTCGTCTGCAAA
AGGTTGCGATATCCAATTAAGAAAATTGAAATGCATAACTCAAGGTCCAAATGCCAAAATAACT
ATGATAGATACCTTAAATCCTCTTAAATCAATAATGAACTCATGGGCAACAGTTCCATTGACTC
CACGGAAAAGAACTGGGTAGTGTTTCTGTACAGGTAACATGGTAAAACTTAGAAAACTAGTTCA
AACACAATCAAACTAGGTAGCAATGGGTAAGTGATCACGAGTAACAAATATACCTCCAGACGCT
TTGTCATGTAGTTTGCATTCAAGATTGCAATCTTTGAAGCATCAGTGAGACCCTTAGAACCCAT
CATGGCTATGTATGTGTAGGAAATTGGTAGAATCAACGCTGATCCCCATGGGGCAGCAGAAATG
GTACCAAGAGGGTCGGTTTTCTCAGGGAGAGGGAAGCCACCGGTGGTGAT
Conservation Information
Conserved circRNAs osa_circ_003609
PMCS
Functional Information
Coding potential Y
Potential coding position 25479309-25478667(-)
25479367-25478927(+)
Potential amino acid sequence MMGSKGLTDASKIAILNANYMTKRLEKHYPVLFRGVNGTVAHEFIIDLRGFKTTAGIEPEDVAK
RLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAEIESGKADVNNNVLKI
TTGGFPLPEKTDPLGTISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMTKRLEKH
YPVLFRGVNGTVAHEFIIDLRGFKTTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESE
SKAELDRFCDALISIREEIAEIESGKADVNNNVLKITTGGFPLPEKTDPLGTISAAPWGSALIL
PISYTYIAMMGSKGLTDASKIAILNANYMTKRLEKHYPVLFRGVNGTVAHEFIIDLRGFKTTAG
IEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAEIESGKAD
VNNNVLKITTGGFPLPEKTDPLGTISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANY
MTKRLEKHYPVLFRGVNGTVAHEFIIDLRGFKTTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTL
MIEPTESESKAELDRFCDALISIREEIAEIESGKADVNNNVLK(-)
MVPRGSVFSGRGKPPVVILRTLLFTSALPLSISAISSLIEIRASQNLSSSALLSLSVGSIISVP
GTGHDIVGAWNP*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021