Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G20110_circ_g.11 |
ID in PlantcircBase | ath_circ_003516 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 6973938-6974129 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G20110 |
Parent gene annotation |
Protein FREE1 |
Parent gene strand | + |
Alternative splicing | AT1G20110_circ_g.5 AT1G20110_circ_g.6 AT1G20110_circ_g.7 AT1G20110_circ_g.8 AT1G20110_circ_g.9 AT1G20110_circ_g.10 |
Support reads | 1 |
Tissues | aerial |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G20110.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.138454867 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6973944-6974126(+) 6974111-6974126(+) 6974113-6973940(-) |
Potential amino acid sequence |
MERNRKSSSGLREGSGRRMKEVACPTCTVHLQEEMERNRKSSSGLREGSGRRMKEVACPTCTVH LQEEMERNRKSSSGLREGSGRRMKEVACPTCTVHLQEEMERNRKSSSGLREGSGRRMKEVACPT CTVHLQ(+) MHCALTGGNGEKPQVFVWFEGRIWEADERSSLSNMHCALTGGNGEKPQVFVWFEGRIWEADERS SLSNMHCALTGGNGEKPQVFVWFEGRIWEADERSSLSNMHCALT(+) MLDKLLLSSASQILPSNQTKTCGFSPFPPVSAQCMLDKLLLSSASQILPSNQTKTCGFSPFPPV SAQCMLDKLLLSSASQILPSNQTKTCGFSPFPPVSAQCMLDKLLLSSASQILPSNQTKTCGFSP FP(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |