Plant Circular RNA Database

Detail information of Os05g0323900_circ_g.4

			
						 General Information
					
						CircRNA Name
						Os05g0323900_circ_g.4
					
						ID in PlantcircBase
						osa_circ_027451
					
						Alias
						Os_ciR9802
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 15049363-15050483  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os05g0323900						
					
						Parent gene annotation
						
							Manganese superoxide dismutase, Heat-stress tolerance (Os05t0323
900-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os05g0323900_circ_g.3 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0323900-01:3

General Information
CircRNA Name	Os05g0323900_circ_g.4
ID in PlantcircBase	osa_circ_027451
Alias	Os_ciR9802
Organism	Oryza sativa
Position	chr5: 15049363-15050483 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	find_circ
Parent gene	Os05g0323900
Parent gene annotation	Manganese superoxide dismutase, Heat-stress tolerance (Os05t0323 900-01)
Parent gene strand	+
Alternative splicing	Os05g0323900_circ_g.3
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0323900-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GCTGACTTCTTGCAATTTGCAGGACCCTCTGGTAACGAAGGGGGCCAACTTGGTTCCTTTGTTG
GGAATTGATGTCTGGGAGCATGCGTACTACCTGCAGgagggtggtggtgatccaccacatgcaa
aacttggctgggccattgatgaggattttggttcatttgaggcacttgtaaagaagatgagtgc
agaaggtg

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							GAGGGTGGTGGTGATCCACCACATGCAAAACTTGGCTGGGCCATTGATGAGGATTTTGGTTCAT
TTGAGGCACTTGTAAAGAAGATGAGTGCAGAAGGTGCTGCTTTACAAGGATCTGGATGGGTGGT
ATGTACACCATGCATTGCTTTATCCATTGATGTGTCATCCTGTTCAGTCTGAAGAAATGTATTG
TTCATTTATTATATTTATTTTCTCGTACAGTGGCTAGCTTTGGATAAAGAGGCAAAGAAGCTTT
CAGTGGAAACAACTGCTAACCAGGTGAAAGTTCTTAACTCTTTGTAGATTATATTATTTGCGCA
TAATAACAGGATGTCCTATACCATGCAGTCTACTCTTGAACAACAACAGTTCAATTCAGTAGAT
TCTTATCATTTTTGTCATGTTTTCAATGTCTGTTGAGATAGTGATAAAAAACACTTCTGTAAGA
TCAAGGGATGGGGATTAGCAATATGGTACATCAATGGTTACTGCAGAAACACATCGTTAGAAAC
ATATGCAATAATTTTGGTACATTGGGCAAGGAAACTGTTATTGGATGCATGTTCATTGTTCTGA
TAAAAAATGGTACCGATCAATATGCTAGTGGCTTGCTAAAATATGTTACTGCAGTTTAGTTAAC
ATGTACTGTTGAAACAATACCTTGTTCAGCAGTCCTGCAATTGGATTTCAAGAGTTAAGAGCAA
GGACACTATATTTTGTTTAATAAGTTGTTATGACATGGTACTTAAAATTAATGTGTTTTACCAG
TATAAGATGTATTGTCTTCTGAACATACTATTTTCTAACATCCTGTAAACTTTTATGAAGTATC
TATGAATTTTCATTGTTTAATGAATTCTGAATATGACTGTTCTAAGTACATGGCAAGAGTTTGC
TGTTCTCATAGTTCAGTTTTTGCTTTGGCTAATGTGTTGAGCAATATGAAATTGTAGCCCTACT
TTCTAAAGGAAAGAATACATTTTTTTTAGCATCCTACATGGTGATTTGATAATAGGGCACAGCT
GACTTCTTGCAATTTGCAGGACCCTCTGGTAACGAAGGGGGCCAACTTGGTTCCTTTGTTGGGA
ATTGATGTCTGGGAGCATGCGTACTACCTGCAG

Sequences
Splice junction sequence	GCTGACTTCTTGCAATTTGCAGGACCCTCTGGTAACGAAGGGGGCCAACTTGGTTCCTTTGTTG GGAATTGATGTCTGGGAGCATGCGTACTACCTGCAGgagggtggtggtgatccaccacatgcaa aacttggctgggccattgatgaggattttggttcatttgaggcacttgtaaagaagatgagtgc agaaggtg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GAGGGTGGTGGTGATCCACCACATGCAAAACTTGGCTGGGCCATTGATGAGGATTTTGGTTCAT TTGAGGCACTTGTAAAGAAGATGAGTGCAGAAGGTGCTGCTTTACAAGGATCTGGATGGGTGGT ATGTACACCATGCATTGCTTTATCCATTGATGTGTCATCCTGTTCAGTCTGAAGAAATGTATTG TTCATTTATTATATTTATTTTCTCGTACAGTGGCTAGCTTTGGATAAAGAGGCAAAGAAGCTTT CAGTGGAAACAACTGCTAACCAGGTGAAAGTTCTTAACTCTTTGTAGATTATATTATTTGCGCA TAATAACAGGATGTCCTATACCATGCAGTCTACTCTTGAACAACAACAGTTCAATTCAGTAGAT TCTTATCATTTTTGTCATGTTTTCAATGTCTGTTGAGATAGTGATAAAAAACACTTCTGTAAGA TCAAGGGATGGGGATTAGCAATATGGTACATCAATGGTTACTGCAGAAACACATCGTTAGAAAC ATATGCAATAATTTTGGTACATTGGGCAAGGAAACTGTTATTGGATGCATGTTCATTGTTCTGA TAAAAAATGGTACCGATCAATATGCTAGTGGCTTGCTAAAATATGTTACTGCAGTTTAGTTAAC ATGTACTGTTGAAACAATACCTTGTTCAGCAGTCCTGCAATTGGATTTCAAGAGTTAAGAGCAA GGACACTATATTTTGTTTAATAAGTTGTTATGACATGGTACTTAAAATTAATGTGTTTTACCAG TATAAGATGTATTGTCTTCTGAACATACTATTTTCTAACATCCTGTAAACTTTTATGAAGTATC TATGAATTTTCATTGTTTAATGAATTCTGAATATGACTGTTCTAAGTACATGGCAAGAGTTTGC TGTTCTCATAGTTCAGTTTTTGCTTTGGCTAATGTGTTGAGCAATATGAAATTGTAGCCCTACT TTCTAAAGGAAAGAATACATTTTTTTTAGCATCCTACATGGTGATTTGATAATAGGGCACAGCT GACTTCTTGCAATTTGCAGGACCCTCTGGTAACGAAGGGGGCCAACTTGGTTCCTTTGTTGGGA ATTGATGTCTGGGAGCATGCGTACTACCTGCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.151353799

Conservation Information
Conserved circRNAs	NA
PMCS	0.151353799

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							15049448-15050480(+)
15050456-15049438(+)
15049388-15049620(-)
15049428-15049636(-)
						
						Potential amino acid sequence
						
							MSAEGAALQGSGWVWLALDKEAKKLSVETTANQDPLVTKGANLVPLLGIDVWEHAYYLQEGGGD
PPHAKLGWAIDEDFGSFEALVKKMSAEGAALQGSGWVWLALDKEAKKLSVETTANQDPLVTKGA
NLVPLLGIDVWEHAYYLQEGGGDPPHAKLGWAIDEDFGSFEALVKKMSAEGAALQGSGWVWLAL
DKEAKKLSVETTANQDPLVTKGANLVPLLGIDVWEHAYYLQEGGGDPPHAKLGWAIDEDFGSFE
ALVKKMSAEGAALQGSGWVWLALDKEAKKLSVETTANQDPLVTKGANLVPLLGIDVWEHAYYLQ
(+)
MSGSMRTTCRRVVVIHHMQNLAGPLMRILVHLRHL*(+)
MWWITTTLLQVVRMLPDINSQQRNQVGPLRYQRVLVSSCFH*(-)
MNQNPHQWPSQVLHVVDHHHPPAGSTHAPRHQFPTKEPSWPPSLPEGPG*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	15049448-15050480(+) 15050456-15049438(+) 15049388-15049620(-) 15049428-15049636(-)
Potential amino acid sequence	MSAEGAALQGSGWVWLALDKEAKKLSVETTANQDPLVTKGANLVPLLGIDVWEHAYYLQEGGGD PPHAKLGWAIDEDFGSFEALVKKMSAEGAALQGSGWVWLALDKEAKKLSVETTANQDPLVTKGA NLVPLLGIDVWEHAYYLQEGGGDPPHAKLGWAIDEDFGSFEALVKKMSAEGAALQGSGWVWLAL DKEAKKLSVETTANQDPLVTKGANLVPLLGIDVWEHAYYLQEGGGDPPHAKLGWAIDEDFGSFE ALVKKMSAEGAALQGSGWVWLALDKEAKKLSVETTANQDPLVTKGANLVPLLGIDVWEHAYYLQ (+) MSGSMRTTCRRVVVIHHMQNLAGPLMRILVHLRHL(+) MWWITTTLLQVVRMLPDINSQQRNQVGPLRYQRVLVSSCFH(-) MNQNPHQWPSQVLHVVDHHHPPAGSTHAPRHQFPTKEPSWPPSLPEGPG*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os05g0323900_circ_g.4

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