Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G07350_circ_g.5 |
ID in PlantcircBase | ath_circ_001140 |
Alias | At_ciR1166 |
Organism | Arabidpsis thaliana |
Position | chr1: 2258120-2258230 JBrowse» |
Reference genome | TAIR10.38 |
Type | u-circRNA |
Identification method | SMALT, Segemehl, find_circ |
Parent gene | AT1G07350 |
Parent gene annotation |
Serine/arginine-rich splicing factor SR45a |
Parent gene strand | - |
Alternative splicing | AT1G07350_circ_g.1 AT1G07350_circ_g.2 AT1G07350_circ_g.3 AT1G07350_circ_g.4 |
Support reads | 2/4 |
Tissues | siliques and seeds/leaf |
Exon boundary | No-No |
Splicing signals | CT-AC |
Number of exons covered | AT1G07350.3:1 AT1G07350.2:1 AT1G07350.4:1 AT1G07350.5:1 AT1G07350.1:1 AT1G07350.6:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.219609768 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Ye et al., 2015 |