Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d035657_circ_g.1 |
ID in PlantcircBase | zma_circ_008909 |
Alias | zma_circ_0002462 |
Organism | Zea mays |
Position | chr6: 39659704-39660248 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d035657 |
Parent gene annotation |
Putative E3 ubiquitin-protein ligase XBAT31 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d035657_T001:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.207967125 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
39659714-39659710(+) 39659994-39659710(+) 39659883-39660127(-) |
Potential amino acid sequence |
MLAAMHGKTDCVLKLLQAGANILMFDSQHGRTCLHHASYFGHVGCLQAILTAARTTPVANSWGF ARFVNVRDDHGATPLHLAARQGRPGCVQALLENGAIVSALTGSYGRR*(+) MGFRSVRQRERRPRRHAAPPRRQAGPPRLRAGAAGERCHRLRFDRLIRTPLMLAAMHGKTDCVL KLLQAGANILMFDSQHGRTCLHHASYFGHVGCLQAILTAARTTPVANSWGFARFVNVRDDHGAT PLHLAARQGRPGCVQALLENGAIVSALTGSYGRR*(+) MRILAPACRSFSTQSVLPCIAASISGVRMSRSKRRRWHRSPAAPARSRGGPAWRRGGAAWRRGR LSR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |