Plant Circular RNA Database

Detail information of Os03g0387900_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os03g0387900_circ_g.5
					
						ID in PlantcircBase
						osa_circ_020115
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 15470071-15472172  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os03g0387900						
					
						Parent gene annotation
						
							Conserved hypothetical protein. (Os03t0387900-01);Conserved hypo
thetical protein. (Os03t0387900-02);Conserved hypothetical prote
in. (Os03t0387900-03);Hypothetical conserved gene. (Os03t0387900
-04)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os03g0387900_circ_g.1 Os03g0387900_circ_g.2 Os03g0387900_circ_g.3 Os03g0387900_circ_g.4 Os03g0387900_circ_g.6 Os03g0387900_circ_g.7 Os03g0387900_circ_g.8 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0387900-01:5
Os03t0387900-03:5
Os03t0387900-02:5
Os03t0387900-04:4

General Information
CircRNA Name	Os03g0387900_circ_g.5
ID in PlantcircBase	osa_circ_020115
Alias	NA
Organism	Oryza sativa
Position	chr3: 15470071-15472172 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os03g0387900
Parent gene annotation	Conserved hypothetical protein. (Os03t0387900-01);Conserved hypo thetical protein. (Os03t0387900-02);Conserved hypothetical prote in. (Os03t0387900-03);Hypothetical conserved gene. (Os03t0387900 -04)
Parent gene strand	+
Alternative splicing	Os03g0387900_circ_g.1 Os03g0387900_circ_g.2 Os03g0387900_circ_g.3 Os03g0387900_circ_g.4 Os03g0387900_circ_g.6 Os03g0387900_circ_g.7 Os03g0387900_circ_g.8
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0387900-01:5 Os03t0387900-03:5 Os03t0387900-02:5 Os03t0387900-04:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CACCTCAATGGTAGTTGATGGGTCCTTCGTATCGTCTATTTCTTCTGATAACTCAGTTGAAGAG
AACAGCTTTCGGCAGCTTCAGGATGCAGTTAGTCAGtttgaaggtaagctcaaggatggatttg
ctcggagcaataatagcgaacatgaaaatggagccgggactgtgagtatatccagcaagaagtc
gaagcatc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							TTTGAAGGTAAGCTCAAGGATGGATTTGCTCGGAGCAATAATAGCGAACATGAAAATGGAGCCG
GGACTGTGAGTATATCCAGCAAGAAGTCGAAGCATCGGGTTGACAGTGAAAAAAAACCCCATGT
TGACATCTCTGGAGTGATTGATTCAGATTCGCAGAAATGTAATTCAGAGCAAATCCATTCAGCT
AATGGGATAGTATCCCGGGATGTCAACCATGATCACATAGAAAACTGCAAAGTTGAATCAAATG
ATTTTCCCTTGAATACTATCTCTGAAACAAGATATCCAACAGACAATTGGAACAGTTCTCAGTT
TGCTCTGAGCAATGATGGTTCACCTGTTCTCAATAATCAGAGTACTCCACAAACTGGTCATGGC
TATGGAGATAATGATCTAACCTACATTGATTGGCCTGCTATTGATAATTTTGAGGACGTCGACA
ACTTATTCAGGTATTCAGAATGTTTCCCTTGCTAGCTTCTAAAGTCTTGAGACAGATTAACTTT
AATTGGTAGTAAAAACACAATGCTATCCTTCTAATATACATTGTTTTCCTGGAAGGAGGTGTGA
TTCCACGTACGGTCAGCAGCAACTTCCGAACACGGATGAACTGTCATGGATTCCTTCTTCAGAT
GCCATGTACTCTTCTGATGTTGCTATGCAACCAGGGTTTGAATCCTCGTATTCTGATTATGGTA
TCCTGGATGACCTCTCCGCATTCAATTGTACGGAAGATAAATCCCTGACAACAGCTGATCCTTC
AAGTGCTGTATGTGACGAGCAATTCGATGACTCTTATCTGTTCAATGAGCAAAAACCTGAAGAT
GTTTATGGCGAACAGGCAAGTAGAATGATTGCTAGGTTGAATTAACTGGCACAAAGCATTATGC
TTTTTTCATTCCTTTTTCTTCTTTTTTTTTTACCATAGGCTTACCAAAGGGATGCGATGGAATT
GTTGTCCAGCGACCAGATATGCACTGGGCAGGAAAACCTAGATATGGTAATTTGACCTTTTCAA
TTAGTTGAATTAAAAAGATAACCACATTAAAATCCGTATTTTGTCATTGGTGCGTTTCGAATAG
TACAAGTGTAACTAAGATAATGTTTTTCATATTAAGTTCTAACTTTCTCTATCTGCAACCATTC
TCTTGGAAGATTGGAACCAAAAAATGATTGAGTTCAGCATTAGCCTCTTTCATATAAAGATTAT
TTTTAATTTGTGTCCTATTTCCCTTCTGCACAGAAGCCACTTAAATATGCTTGAGCATGATCCT
ACAGTGCAGTAACTACCTAACTGCATTAGTTGTCATCAATATTCATAGTGCATTTTTTATGGGA
TTGTTTCTGTAGTGCAGCTTTAGGTATGCGAGTAGGCCTGTAACATCACCTATTACTATTACTT
AACTTTCTCTTGGTAGAATGATGTCCATTAGAATGGATTTTTCCCAGTAAATCATAAATTTTGA
TTTCTTCTGGTTTATTGTGATGATCTTTACGCAGATTGGAAATCGATATTCATCGGAAAATGCC
ATGGAACAGCCTGAAGATCAGAAGTTTTCTATAGCTTCAGGTTCTCAACTAAGCTCTTCTCAGA
ATTTATTGAACCAAAAGAACCACTTGGATTCAACTTCACCAAGTAACATAACTTCTGAGTCCTA
TCCAGAAAGAAATTGCCAGATCATTCCATCTGGGGCTTCCTTTGCAGAGAGAAACTTGAAGGGT
ATTATATGTGCAAAATTGTCATACGGAATGCTTTCTAGTATGTTTTCCTTCCTTGTGGTGTAAT
TATCTTATTCAACGTTTAAAACTCTGTATTGAGTGCAGTGCAGAAGAAAGTGGCCAGTTCGGCA
TCAGGACAACTTATCAGTGATAATGTGACTGGACATCCTGGTCATCAAACATTGACAAGAAGGG
CTTCATATCCTTGTGAGAATCATGAAATTGGAAAGAGGTCCTTAGGAAAAAGAGGTTTGGGTCA
TTCTGATGTTGCAATGGGCACCTCAATGGTAGTTGATGGGTCCTTCGTATCGTCTATTTCTTCT
GATAACTCAGTTGAAGAGAACAGCTTTCGGCAGCTTCAGGATGCAGTTAGTCAG
						
					

			
		

Sequences
Splice junction sequence	CACCTCAATGGTAGTTGATGGGTCCTTCGTATCGTCTATTTCTTCTGATAACTCAGTTGAAGAG AACAGCTTTCGGCAGCTTCAGGATGCAGTTAGTCAGtttgaaggtaagctcaaggatggatttg ctcggagcaataatagcgaacatgaaaatggagccgggactgtgagtatatccagcaagaagtc gaagcatc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TTTGAAGGTAAGCTCAAGGATGGATTTGCTCGGAGCAATAATAGCGAACATGAAAATGGAGCCG GGACTGTGAGTATATCCAGCAAGAAGTCGAAGCATCGGGTTGACAGTGAAAAAAAACCCCATGT TGACATCTCTGGAGTGATTGATTCAGATTCGCAGAAATGTAATTCAGAGCAAATCCATTCAGCT AATGGGATAGTATCCCGGGATGTCAACCATGATCACATAGAAAACTGCAAAGTTGAATCAAATG ATTTTCCCTTGAATACTATCTCTGAAACAAGATATCCAACAGACAATTGGAACAGTTCTCAGTT TGCTCTGAGCAATGATGGTTCACCTGTTCTCAATAATCAGAGTACTCCACAAACTGGTCATGGC TATGGAGATAATGATCTAACCTACATTGATTGGCCTGCTATTGATAATTTTGAGGACGTCGACA ACTTATTCAGGTATTCAGAATGTTTCCCTTGCTAGCTTCTAAAGTCTTGAGACAGATTAACTTT AATTGGTAGTAAAAACACAATGCTATCCTTCTAATATACATTGTTTTCCTGGAAGGAGGTGTGA TTCCACGTACGGTCAGCAGCAACTTCCGAACACGGATGAACTGTCATGGATTCCTTCTTCAGAT GCCATGTACTCTTCTGATGTTGCTATGCAACCAGGGTTTGAATCCTCGTATTCTGATTATGGTA TCCTGGATGACCTCTCCGCATTCAATTGTACGGAAGATAAATCCCTGACAACAGCTGATCCTTC AAGTGCTGTATGTGACGAGCAATTCGATGACTCTTATCTGTTCAATGAGCAAAAACCTGAAGAT GTTTATGGCGAACAGGCAAGTAGAATGATTGCTAGGTTGAATTAACTGGCACAAAGCATTATGC TTTTTTCATTCCTTTTTCTTCTTTTTTTTTTACCATAGGCTTACCAAAGGGATGCGATGGAATT GTTGTCCAGCGACCAGATATGCACTGGGCAGGAAAACCTAGATATGGTAATTTGACCTTTTCAA TTAGTTGAATTAAAAAGATAACCACATTAAAATCCGTATTTTGTCATTGGTGCGTTTCGAATAG TACAAGTGTAACTAAGATAATGTTTTTCATATTAAGTTCTAACTTTCTCTATCTGCAACCATTC TCTTGGAAGATTGGAACCAAAAAATGATTGAGTTCAGCATTAGCCTCTTTCATATAAAGATTAT TTTTAATTTGTGTCCTATTTCCCTTCTGCACAGAAGCCACTTAAATATGCTTGAGCATGATCCT ACAGTGCAGTAACTACCTAACTGCATTAGTTGTCATCAATATTCATAGTGCATTTTTTATGGGA TTGTTTCTGTAGTGCAGCTTTAGGTATGCGAGTAGGCCTGTAACATCACCTATTACTATTACTT AACTTTCTCTTGGTAGAATGATGTCCATTAGAATGGATTTTTCCCAGTAAATCATAAATTTTGA TTTCTTCTGGTTTATTGTGATGATCTTTACGCAGATTGGAAATCGATATTCATCGGAAAATGCC ATGGAACAGCCTGAAGATCAGAAGTTTTCTATAGCTTCAGGTTCTCAACTAAGCTCTTCTCAGA ATTTATTGAACCAAAAGAACCACTTGGATTCAACTTCACCAAGTAACATAACTTCTGAGTCCTA TCCAGAAAGAAATTGCCAGATCATTCCATCTGGGGCTTCCTTTGCAGAGAGAAACTTGAAGGGT ATTATATGTGCAAAATTGTCATACGGAATGCTTTCTAGTATGTTTTCCTTCCTTGTGGTGTAAT TATCTTATTCAACGTTTAAAACTCTGTATTGAGTGCAGTGCAGAAGAAAGTGGCCAGTTCGGCA TCAGGACAACTTATCAGTGATAATGTGACTGGACATCCTGGTCATCAAACATTGACAAGAAGGG CTTCATATCCTTGTGAGAATCATGAAATTGGAAAGAGGTCCTTAGGAAAAAGAGGTTTGGGTCA TTCTGATGTTGCAATGGGCACCTCAATGGTAGTTGATGGGTCCTTCGTATCGTCTATTTCTTCT GATAACTCAGTTGAAGAGAACAGCTTTCGGCAGCTTCAGGATGCAGTTAGTCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.106643149

Conservation Information
Conserved circRNAs	NA
PMCS	0.106643149

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							15470715-15472169(+)
15472091-15470140(+)
15470198-15472127(-)
15470206-15472171(-)
						
					

						Potential amino acid sequence
						
							MYSSDVAMQPGFESSYSDYGILDDLSAFNCTEDKSLTTADPSSAVCDEQFDDSYLFNEQKPEDV
YGEQAYQRDAMELLSSDQICTGQENLDMIGNRYSSENAMEQPEDQKFSIASGSQLSSSQNLLNQ
KNHLDSTSPSNITSESYPERNCQIIPSGASFAERNLKVQKKVASSASGQLISDNVTGHPGHQTL
TRRASYPCENHEIGKRSLGKRGLGHSDVAMGTSMVVDGSFVSSISSDNSVEENSFRQLQDAVSQ
FEGKLKDGFARSNNSEHENGAGTVSISSKKSKHRVDSEKKPHVDISGVIDSDSQKCNSEQIHSA
NGIVSRDVNHDHIENCKVESNDFPLNTISETRYPTDNWNSSQFALSNDGSPVLNNQSTPQTGHG
YGDNDLTYIDWPAIDNFEDVDNLFRRCDSTYGQQQLPNTDELSWIPSSDAMYSSDVAMQPGFES
SYSDYGILDDLSAFNCTEDKSLTTADPSSAVCDEQFDDSYLFNEQKPEDVYGEQAYQRDAMELL
SSDQICTGQENLDMIGNRYSSENAMEQPEDQKFSIASGSQLSSSQNLLNQKNHLDSTSPSNITS
ESYPERNCQIIPSGASFAERNLKVQKKVASSASGQLISDNVTGHPGHQTLTRRASYPCENHEIG
KRSLGKRGLGHSDVAMGTSMVVDGSFVSSISSDNSVEENSFRQLQDAVSQFEGKLKDGFARSNN
SEHENGAGTVSISSKKSKHRVDSEKKPHVDISGVIDSDSQKCNSEQIHSANGIVSRDVNHDHIE
NCKVESNDFPLNTISETRYPTDNWNSSQFALSNDGSPVLNNQSTPQTGHGYGDNDLTYIDWPAI
DNFEDVDNLFRRCDSTYGQQQLPNTDELSWIPSSDAMYSSDVAMQPGFESSYSDYGILDDLSAF
NCTEDKSLTTADPSSAVCDEQFDDSYLFNEQKPEDVYGEQAYQRDAMELLSSDQICTGQENLDM
IGNRYSSENAMEQPEDQKFSIASGSQLSSSQNLLNQKNHLDSTSPSNITSESYPERNCQIIPSG
ASFAERNLKVQKKVASSASGQLISDNVTGHPGHQTLTRRASYPCENHEIGKRSLGKRGLGHSDV
AMGTSMVVDGSFVSSISSDNSVEENSFRQLQDAVSQFEGKLKDGFARSNNSEHENGAGTVSISS
KKSKHRVDSEKKPHVDISGVIDSDSQKCNSEQIHSANGIVSRDVNHDHIENCKVESNDFPLNTI
SETRYPTDNWNSSQFALSNDGSPVLNNQSTPQTGHGYGDNDLTYIDWPAIDNFEDVDNLFRRCD
STYGQQQLPNTDELSWIPSSDAMYSSDVAMQPGFESSYSDYGILDDLSAFNCTEDKSLTTADPS
SAVCDEQFDDSYLFNEQKPEDVYGEQAYQRDAMELLSSDQICTGQENLDMIGNRYSSENAMEQP
EDQKFSIASGSQLSSSQNLLNQKNHLDSTSPSNITSESYPERNCQIIPSGASFAERNLKVQKKV
ASSASGQLISDNVTGHPGHQTLTRRASYPCENHEIGKRSLGKRGLGHSDVAMGTSMVVDGSFVS
SISSDNSVEENSFRQLQDAVSQ(+)
MGPSYRLFLLITQLKRTAFGSFRMQLVSLKVSSRMDLLGAIIANMKMEPGL*(+)
MGFFFTVNPMLRLLAGYTHSPGSIFMFAIIAPSKSILELTFKLTNCILKLPKAVLFN*(-)
MSTWGFFSLSTRCFDFLLDILTVPAPFSCSLLLLRANPSLSLPSN*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	15470715-15472169(+) 15472091-15470140(+) 15470198-15472127(-) 15470206-15472171(-)
Potential amino acid sequence	MYSSDVAMQPGFESSYSDYGILDDLSAFNCTEDKSLTTADPSSAVCDEQFDDSYLFNEQKPEDV YGEQAYQRDAMELLSSDQICTGQENLDMIGNRYSSENAMEQPEDQKFSIASGSQLSSSQNLLNQ KNHLDSTSPSNITSESYPERNCQIIPSGASFAERNLKVQKKVASSASGQLISDNVTGHPGHQTL TRRASYPCENHEIGKRSLGKRGLGHSDVAMGTSMVVDGSFVSSISSDNSVEENSFRQLQDAVSQ FEGKLKDGFARSNNSEHENGAGTVSISSKKSKHRVDSEKKPHVDISGVIDSDSQKCNSEQIHSA NGIVSRDVNHDHIENCKVESNDFPLNTISETRYPTDNWNSSQFALSNDGSPVLNNQSTPQTGHG YGDNDLTYIDWPAIDNFEDVDNLFRRCDSTYGQQQLPNTDELSWIPSSDAMYSSDVAMQPGFES SYSDYGILDDLSAFNCTEDKSLTTADPSSAVCDEQFDDSYLFNEQKPEDVYGEQAYQRDAMELL SSDQICTGQENLDMIGNRYSSENAMEQPEDQKFSIASGSQLSSSQNLLNQKNHLDSTSPSNITS ESYPERNCQIIPSGASFAERNLKVQKKVASSASGQLISDNVTGHPGHQTLTRRASYPCENHEIG KRSLGKRGLGHSDVAMGTSMVVDGSFVSSISSDNSVEENSFRQLQDAVSQFEGKLKDGFARSNN SEHENGAGTVSISSKKSKHRVDSEKKPHVDISGVIDSDSQKCNSEQIHSANGIVSRDVNHDHIE NCKVESNDFPLNTISETRYPTDNWNSSQFALSNDGSPVLNNQSTPQTGHGYGDNDLTYIDWPAI DNFEDVDNLFRRCDSTYGQQQLPNTDELSWIPSSDAMYSSDVAMQPGFESSYSDYGILDDLSAF NCTEDKSLTTADPSSAVCDEQFDDSYLFNEQKPEDVYGEQAYQRDAMELLSSDQICTGQENLDM IGNRYSSENAMEQPEDQKFSIASGSQLSSSQNLLNQKNHLDSTSPSNITSESYPERNCQIIPSG ASFAERNLKVQKKVASSASGQLISDNVTGHPGHQTLTRRASYPCENHEIGKRSLGKRGLGHSDV AMGTSMVVDGSFVSSISSDNSVEENSFRQLQDAVSQFEGKLKDGFARSNNSEHENGAGTVSISS KKSKHRVDSEKKPHVDISGVIDSDSQKCNSEQIHSANGIVSRDVNHDHIENCKVESNDFPLNTI SETRYPTDNWNSSQFALSNDGSPVLNNQSTPQTGHGYGDNDLTYIDWPAIDNFEDVDNLFRRCD STYGQQQLPNTDELSWIPSSDAMYSSDVAMQPGFESSYSDYGILDDLSAFNCTEDKSLTTADPS SAVCDEQFDDSYLFNEQKPEDVYGEQAYQRDAMELLSSDQICTGQENLDMIGNRYSSENAMEQP EDQKFSIASGSQLSSSQNLLNQKNHLDSTSPSNITSESYPERNCQIIPSGASFAERNLKVQKKV ASSASGQLISDNVTGHPGHQTLTRRASYPCENHEIGKRSLGKRGLGHSDVAMGTSMVVDGSFVS SISSDNSVEENSFRQLQDAVSQ(+) MGPSYRLFLLITQLKRTAFGSFRMQLVSLKVSSRMDLLGAIIANMKMEPGL(+) MGFFFTVNPMLRLLAGYTHSPGSIFMFAIIAPSKSILELTFKLTNCILKLPKAVLFN(-) MSTWGFFSLSTRCFDFLLDILTVPAPFSCSLLLLRANPSLSLPSN*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0387900_circ_g.5

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