Detail information of Os05g0493500_circ_g.2


General Information
CircRNA Name Os05g0493500_circ_g.2
ID in PlantcircBase osa_circ_028342
Alias Os_ciR5475
Organism Oryza sativa
Position chr5: 24241790-24242233  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os05g0493400
Parent gene annotation Similar to Cyclin box (Fragment). (Os05t0493400-01)
Parent gene strand -
Alternative splicing Os05g0493500_circ_g.1
Support reads 3
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os05t0493500-00:2
Os05t0493400-01:1
Os05t0493500-00:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAAGAAGTCGTCGAGGACATCGACAAGCTCGACGGCGACAACCAGCTCGCCGTGGTGGAGTAC
ATCGAGGACATCTACAACTTCTACAGGACAGCCCAGattgtcgtgcagaatccggccaggaagg
agccagctccgaagccggcaaagaaggtcgtaccccgtccggagaacgccgccaaggccagcac
cggcgccg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 354
Transcript exons: 24241790-24242017,24242108-24242233
ATTGTCGTGCAGAATCCGGCCAGGAAGGAGCCAGCTCCGAAGCCGGCAAAGAAGGTCGTACCCC
GTCCGGAGAACGCCGCCAAGGCCAGCACCGGCGCCGGCGTCAACGAGAACAAGAAGCCGTCGGA
GTCGGAGGGCGCCGGCAGCAGCAGCGGCGGTTCAGCCCTCAAGTACTCCAGGAAGAAGGTCGTG
AACACGCTTACATCTGTGCTTACTGCTCGTTCCAAGCACGCGTGTGGCATTACTGAGAAGCCAA
AAGAAGTCGTCGAGGACATCGACAAGCTCGACGGCGACAACCAGCTCGCCGTGGTGGAGTACAT
CGAGGACATCTACAACTTCTACAGGACAGCCCAG

Genomic sequence ATTGTCGTGCAGAATCCGGCCAGGAAGGAGCCAGCTCCGAAGCCGGCAAAGAAGGTCGTACCCC
GTCCGGAGAACGCCGCCAAGGCCAGCACCGGCGCCGGCGTCAACGAGAACAAGAAGCCGTCGGA
GTCGGAGGGCGCCGGCAGCAGCAGCGGCGGTTCAGCCCTCAAGTACTCCAGGAAGAAGGTCGTG
AACACGCTTACATCTGTGCTTACTGCTCGTTCCAAGGTGAGTGATCGATCGAACACCTGTGCTT
GCCTGCTTATTTCTGCATAATTGCACTGTAGCTGAATCTGAATTCGATGTTGTTAATGGCAGCA
CGCGTGTGGCATTACTGAGAAGCCAAAAGAAGTCGTCGAGGACATCGACAAGCTCGACGGCGAC
AACCAGCTCGCCGTGGTGGAGTACATCGAGGACATCTACAACTTCTACAGGACAGCCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.239219482
Functional Information
Coding potential Y
Potential coding position 24242210-24242220(-)
Potential amino acid sequence MSSMYSTTASWLSPSSLSMSSTTSFGFSVMPHACLERAVSTDVSVFTTFFLEYLRAEPPLLLPA
PSDSDGFLFSLTPAPVLALAAFSGRGTTFFAGFGAGSFLAGFCTTIWAVL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015