Plant Circular RNA Database

Detail information of Csa4G011080_circ_g.1

			
						 General Information
					
						CircRNA Name
						Csa4G011080_circ_g.1
					
						ID in PlantcircBase
						csa_circ_002300
					
						Alias
						Chr4:1640658_1644673
					
						Organism
						
							Cucumis sativus						
					
						Position
						
							chrChr4: 1640658-1644673  JBrowse»						
					
						Reference genome
						
							Cucumis sativus v1.5						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							Csa4G011080						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaf,root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Csa4G011080.1:6

General Information
CircRNA Name	Csa4G011080_circ_g.1
ID in PlantcircBase	csa_circ_002300
Alias	Chr4:1640658_1644673
Organism	Cucumis sativus
Position	chrChr4: 1640658-1644673 JBrowse»
Reference genome	Cucumis sativus v1.5
Type	e-circRNA
Identification method	CIRI2
Parent gene	Csa4G011080
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	NA
Support reads	NA
Tissues	leaf,root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Csa4G011080.1:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATGCGACAATGGTGGAACTAGCTAAACTATTTCCTGACGAAATTTCTGCTGATCAGAGCAAAGC
TAAGATCGTGAAGTACCACGTTGTTAAAACCCCAAGggagtacctgatcgtgtaacaacagagg
tgtttattgctatgtcaaaggctctgaacttcattaaccccgatgaactttctatgcaatgcat
tttgattg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 719
Transcript exons: 1640658-1640777,1641658-1641871,1641955-1642057,1643162-
1643209,1643501-1643546,1644486-1644673
GGAGTACCTGATCGTGTAACAACAGAGGTGTTTATTGCTATGTCAAAGGCTCTGAACTTCATTA
ACCCCGATGAACTTTCTATGCAATGCATTTTGATTGCCTTGAATCGATTTCTTCAGGAGAAGCA
TGGCTCTAAGATGGCTTTCTTAGATGGAAATCCTCCTGAGAGACTATGTGAGCCAATTGTCGAG
CATATTCAGTCATTGGGTGGTGAAGTACGACTTAATTCCAGGATACAAAAAATTGAGTTGAACA
ATGATGGAACAGTGAAGAGGTTCTCATTAAACGATGGGAATGTAATTGAAGGAGATGCTTACGT
ATTTGCTACTCCGGTTGATATCCTGAAGCTTCTTTTGCCTGATGACTGGAAAGCAATCCCATAC
TTCAAAAAGCTGGAAAAATTAGTTGGAGTTCCAGTAATCAATGTCCACATATGGTTTGACAGGA
AACTGAAGAATACCTATGATCACTTACTTTTTAGCAGGAGTCCGCTTCTTAGTGTTTATGCGGA
CATGTCAGTTACATGTAAGGAATATTATAACCCAAACCAGTCCATGTTGGAACTAGTCTTCGCA
CCTGCAGAAGAGTGGATTTCTCGGAGTGACTCGGACATTATTGATGCGACAATGGTGGAACTAG
CTAAACTATTTCCTGACGAAATTTCTGCTGATCAGAGCAAAGCTAAGATCGTGAAGTACCACGT
TGTTAAAACCCCAAG
						
					

						Genomic sequence
						
							GGAGTACCTGATCGTGTAACAACAGAGGTGTTTATTGCTATGTCAAAGGCTCTGAACTTCATTA
ACCCCGATGAACTTTCTATGCAATGCATTTTGATTGCCTTGAATCGATTTCTTCAGGTATGATT
ACCTTGTCAATTTTATAGTATTTCTAGTTTTCTTTTTGTATGAGAAACAATATAGTCTTTCTAC
TTTAGTCACTAGTTTGGAGATTTTTTTAACAAGAAGCAAAACTTTTGATTGATGTAATGAAAAG
AGAATAATCCTCAAAGGATACAAACTCCACATGAGAGTAAGAGAAAAAAATTGAAAAACCCTAC
CAAGAAAATATAAAAGCACACATGTTGAGACAAATTTCCTGTAGTGTTAGTTTCAAGAACAACT
TAATAGGGAACACCTAGATGGAGTCTTTCAAATGAGCTAATTCAAAATGATGGATCCAGGGAAT
TTGCTTATCATGGAAAATTCTTTGATTTATTTCCAGAACAATTATGACAATATAGCGTTCACCG
CATTAGTTCAACACGTGTTGGAATTTACTTTTTACCTTTTCATTAATTGATCAATCTTTGATTC
ACCTATATTAATCCCACATGATGCTGATTTCTCCATTTCTTTCCAAGGATTTTCTAATATGTGC
ACACCACAGACATACAGTTACTTAGTTTATGTTTGAACCCATTTGATGTCTCCCCCCTCCATTG
TAGGGACTATAATTGGATGACTTAAAAGTGCGATGAATTTCAGTTTCCACTCTCTTTATGACAC
TTTATTCTATTGTTATGGGAGACAACTATCCTAGTTCTACCCTTTGTTCTTGGAAATACATTTT
TCCTATCTGGTTTTCAAAATAAATTTGATGAATTAGTTAAAATCTTATTACCTCTACAGTAGTT
TCATGCTGGCTGCCATTAATATTGTGGCAACTCTTTGAGAATTGAATTATGAATTTTTCTTATG
ATCCAAGCCTTATTAATTTGATTACATGTAACTCTTGTAGGAGAAGCATGGCTCTAAGATGGCT
TTCTTAGATGGAAATCCTCCTGAGAGACTATGTGAGCCAATTGTCGAGCATATTCAGTCATTGG
GTGGTGAAGTACGACTTAATTCCAGGATACAAAAAATTGAGTTGAACAATGATGGAACAGTGAA
GAGGTTCTCATTAAACGATGGGAATGTAATTGAAGGAGATGCTTACGTATTTGCTACTCCGGGT
AACGTAACTTTTGGTGAAATCTTTTACATATATCATATTTTTTAAATTTCACTTAAATTGTAAT
TCATTTATTCCATACAGTTGATATCCTGAAGCTTCTTTTGCCTGATGACTGGAAAGCAATCCCA
TACTTCAAAAAGCTGGAAAAATTAGTTGGAGTTCCAGTAATCAATGTCCACATATGGTAGTAGT
ACCCTCCCCCTCTCTTGGATTATTCACGCTACTTTGTGAGGGCCCCTATGCTTTTCAATACTCC
TTCTTTTTCATATCCTAAGTTCTTTTCCTATGGGTATGTTAGATTGACTAGTTGACTTAAGTTG
TAGGAGTAGTTTTTGATTATTGGGAAGAATGTCATCTGTGATTATATGATGAGACAAAGCATGA
GGAGTCCTTTGCAATTCACAATTTGATTGGAAATTTAATACATAGGATTTTTTTTTGTAAGATC
ATTAAGGAACTCTTTCACTACAACTTATCAATTTTCATATGGTTCATTTCATTTTATGATTCGT
ATTTAAACAACATATTTTATGATGTGTGTTAGATATTTTTTTTAAACAAAAATTATCAATAAAC
TGGTTAATTGGATAATTATCTTAAATAATATTTAAATTATTTAAAGAATGGTTTTGGATGATAT
ATGATTCTAATTTTAGGTAAAGACTACCATAGAATCTACACAATGGGATCTCTTTCTCTACTTC
CTAGTCCCCCCTCGTGCTCTCTGTTTCCTCCCTCCTCTCATGTCATTTGTTTCTTCTCATCCTC
TTAGGTCCGGTTATGGAGTTTCTTCTTAAGTTTATCATATGGTTGCAATGGTTGATCATGCTCT
TCCTTGTCGTTTTGTCTCATTGAAAGCAGTTCATTTTGTCTGGTCAGATAAAATGTTCAAAGGT
GACTCAGGCGAGAGAATTATCAATGCAGTAATTGATGGATATAAATCTTTTGCAATTTTGTCTG
AACCTCATCACTTAGATACTTATATAGAACCAAGATTGGGATTAGTAGTTTTTCTTTTTTGTAG
AGTAACTTCTAATAGAAAAGAAAGTATGGAGAAGATTATGGCCTAAAAACTGTGGTAGGATATG
ATACATCATGGCTTGGATGGGTACGAAAAATCCAAGTTGTAGACTAGCTTTCCGAGATTATTGA
GGACTGATCATGTGGCGTTTAATTTATGAGTGTTTTGAGAAATATAAACATGGGGCATGTGTAT
CGCAATGTTAATGTAACCAAATATAGGTGCTTCATATAATCAATAATTTGGTGATATTATTTTT
CTTTGCAGGTTTGACAGGAAACTGAAGAATACCTATGATCACTTACTTTTTAGCAGGTCCTTTG
TTTATTCATATTTAACTTTCTGCATTTGGTGATAGAACGGTTTTTGTATCTCATAATGCATTTT
TGTTATTTGATAGAAGGTTGTTCTTGGGCGAACTATATAATCCCCTTCCTCCACAAAATAATTA
TAATAATAAGGAAAAAGAGGAAACTAATCAAGTGAAACCAGAAAGCTAGTGCAAAAACATGCTA
AATTTAATATCTTGGGTAGTAAGATTACACGATGCTTTTATTGATTTTACCCTTGACGCTAAAT
ATTTTCTATTTCTTTACCTCAATGCAGGAGTCCGCTTCTTAGTGTTTATGCGGACATGTCAGTT
ACATGTAAGGTATAATTACTTACAACTGAGGCTGTTTTTATTTCGGTGGGTTTTGATCCAACTC
ATGAGCATAGCCCTAAAAATTTTATATTTCCATTTTTAATATTGGGAAATCTCACCTTCAAGTA
TTTGTGAGCATATCCTCACAAGAATAAGATATGAATATATTGAAATATGATGATGAAGAAATAC
AAGATAAATCCAAGTATATAAAGGAACTTGGAATCTTTCTCTTGAGTGTACTCACCCAAGCCCT
AGAACACTCCACAAGTAGTCCACCCTTCACTCACTCACCCTCTTTCTATCTTTAACAACATTCA
GCACCCTTATTCCCCTTTACGGCTATCTAAGTACCTAAAAGTATTCTCCTAGTCTTGGCACATC
TGGTAGCAATTCAAAATACTCGTATCTCACATTTTCATGGACATATAAGAATATTTACTTTACT
GTTTTATAAATCATTTGTCTTCAACCCAAGGGCCTTTATTTCTTCCCCTTTCTGTCTTTCTTCT
ATAGATATGTAAATATGGCCAGATTGTTAAAGCACTACTTTTGTCATTCAAGCAAGATATATGC
AATTCCTTTATTGTATGCATATCAATATATCAGGTTCCCAATAGTTCTGTTAAGGGTCTGTTGT
TTCTCTTATTTCCATCTTTTGGGAATTACAAAAAGTTAAATTTGATTTATGGTGTAAGAGAATG
AAATTAAATGCAATCAACTATGCATTTGGTTAATCATTGTCTCAAGTCTTTAAATTCTCATTCT
CTTGCAATATGGGTTTGTTCTGTCCTTGCTTTCCGACTTTGGTTCCTGGAGCTTCTCTAATCAG
CAATTGCAGTATGTAGTGCTACCAATGGTCTTTAAATTTCTCATTCTTTTGATATCCTCATCAC
TGGTAGTTTAGTATGCTCAGCAGTAATATTCTCTCGTGCTTTTCTGATACAGGAATATTATAAC
CCAAACCAGTCCATGTTGGAACTAGTCTTCGCACCTGCAGAAGAGTGGATTTCTCGGAGTGACT
CGGACATTATTGATGCGACAATGGTGGAACTAGCTAAACTATTTCCTGACGAAATTTCTGCTGA
TCAGAGCAAAGCTAAGATCGTGAAGTACCACGTTGTTAAAACCCCAAG
						
					

			
		

Sequences
Splice junction sequence	ATGCGACAATGGTGGAACTAGCTAAACTATTTCCTGACGAAATTTCTGCTGATCAGAGCAAAGC TAAGATCGTGAAGTACCACGTTGTTAAAACCCCAAGggagtacctgatcgtgtaacaacagagg tgtttattgctatgtcaaaggctctgaacttcattaaccccgatgaactttctatgcaatgcat tttgattg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 719 Transcript exons: 1640658-1640777,1641658-1641871,1641955-1642057,1643162- 1643209,1643501-1643546,1644486-1644673 GGAGTACCTGATCGTGTAACAACAGAGGTGTTTATTGCTATGTCAAAGGCTCTGAACTTCATTA ACCCCGATGAACTTTCTATGCAATGCATTTTGATTGCCTTGAATCGATTTCTTCAGGAGAAGCA TGGCTCTAAGATGGCTTTCTTAGATGGAAATCCTCCTGAGAGACTATGTGAGCCAATTGTCGAG CATATTCAGTCATTGGGTGGTGAAGTACGACTTAATTCCAGGATACAAAAAATTGAGTTGAACA ATGATGGAACAGTGAAGAGGTTCTCATTAAACGATGGGAATGTAATTGAAGGAGATGCTTACGT ATTTGCTACTCCGGTTGATATCCTGAAGCTTCTTTTGCCTGATGACTGGAAAGCAATCCCATAC TTCAAAAAGCTGGAAAAATTAGTTGGAGTTCCAGTAATCAATGTCCACATATGGTTTGACAGGA AACTGAAGAATACCTATGATCACTTACTTTTTAGCAGGAGTCCGCTTCTTAGTGTTTATGCGGA CATGTCAGTTACATGTAAGGAATATTATAACCCAAACCAGTCCATGTTGGAACTAGTCTTCGCA CCTGCAGAAGAGTGGATTTCTCGGAGTGACTCGGACATTATTGATGCGACAATGGTGGAACTAG CTAAACTATTTCCTGACGAAATTTCTGCTGATCAGAGCAAAGCTAAGATCGTGAAGTACCACGT TGTTAAAACCCCAAG
Genomic sequence	GGAGTACCTGATCGTGTAACAACAGAGGTGTTTATTGCTATGTCAAAGGCTCTGAACTTCATTA ACCCCGATGAACTTTCTATGCAATGCATTTTGATTGCCTTGAATCGATTTCTTCAGGTATGATT ACCTTGTCAATTTTATAGTATTTCTAGTTTTCTTTTTGTATGAGAAACAATATAGTCTTTCTAC TTTAGTCACTAGTTTGGAGATTTTTTTAACAAGAAGCAAAACTTTTGATTGATGTAATGAAAAG AGAATAATCCTCAAAGGATACAAACTCCACATGAGAGTAAGAGAAAAAAATTGAAAAACCCTAC CAAGAAAATATAAAAGCACACATGTTGAGACAAATTTCCTGTAGTGTTAGTTTCAAGAACAACT TAATAGGGAACACCTAGATGGAGTCTTTCAAATGAGCTAATTCAAAATGATGGATCCAGGGAAT TTGCTTATCATGGAAAATTCTTTGATTTATTTCCAGAACAATTATGACAATATAGCGTTCACCG CATTAGTTCAACACGTGTTGGAATTTACTTTTTACCTTTTCATTAATTGATCAATCTTTGATTC ACCTATATTAATCCCACATGATGCTGATTTCTCCATTTCTTTCCAAGGATTTTCTAATATGTGC ACACCACAGACATACAGTTACTTAGTTTATGTTTGAACCCATTTGATGTCTCCCCCCTCCATTG TAGGGACTATAATTGGATGACTTAAAAGTGCGATGAATTTCAGTTTCCACTCTCTTTATGACAC TTTATTCTATTGTTATGGGAGACAACTATCCTAGTTCTACCCTTTGTTCTTGGAAATACATTTT TCCTATCTGGTTTTCAAAATAAATTTGATGAATTAGTTAAAATCTTATTACCTCTACAGTAGTT TCATGCTGGCTGCCATTAATATTGTGGCAACTCTTTGAGAATTGAATTATGAATTTTTCTTATG ATCCAAGCCTTATTAATTTGATTACATGTAACTCTTGTAGGAGAAGCATGGCTCTAAGATGGCT TTCTTAGATGGAAATCCTCCTGAGAGACTATGTGAGCCAATTGTCGAGCATATTCAGTCATTGG GTGGTGAAGTACGACTTAATTCCAGGATACAAAAAATTGAGTTGAACAATGATGGAACAGTGAA GAGGTTCTCATTAAACGATGGGAATGTAATTGAAGGAGATGCTTACGTATTTGCTACTCCGGGT AACGTAACTTTTGGTGAAATCTTTTACATATATCATATTTTTTAAATTTCACTTAAATTGTAAT TCATTTATTCCATACAGTTGATATCCTGAAGCTTCTTTTGCCTGATGACTGGAAAGCAATCCCA TACTTCAAAAAGCTGGAAAAATTAGTTGGAGTTCCAGTAATCAATGTCCACATATGGTAGTAGT ACCCTCCCCCTCTCTTGGATTATTCACGCTACTTTGTGAGGGCCCCTATGCTTTTCAATACTCC TTCTTTTTCATATCCTAAGTTCTTTTCCTATGGGTATGTTAGATTGACTAGTTGACTTAAGTTG TAGGAGTAGTTTTTGATTATTGGGAAGAATGTCATCTGTGATTATATGATGAGACAAAGCATGA GGAGTCCTTTGCAATTCACAATTTGATTGGAAATTTAATACATAGGATTTTTTTTTGTAAGATC ATTAAGGAACTCTTTCACTACAACTTATCAATTTTCATATGGTTCATTTCATTTTATGATTCGT ATTTAAACAACATATTTTATGATGTGTGTTAGATATTTTTTTTAAACAAAAATTATCAATAAAC TGGTTAATTGGATAATTATCTTAAATAATATTTAAATTATTTAAAGAATGGTTTTGGATGATAT ATGATTCTAATTTTAGGTAAAGACTACCATAGAATCTACACAATGGGATCTCTTTCTCTACTTC CTAGTCCCCCCTCGTGCTCTCTGTTTCCTCCCTCCTCTCATGTCATTTGTTTCTTCTCATCCTC TTAGGTCCGGTTATGGAGTTTCTTCTTAAGTTTATCATATGGTTGCAATGGTTGATCATGCTCT TCCTTGTCGTTTTGTCTCATTGAAAGCAGTTCATTTTGTCTGGTCAGATAAAATGTTCAAAGGT GACTCAGGCGAGAGAATTATCAATGCAGTAATTGATGGATATAAATCTTTTGCAATTTTGTCTG AACCTCATCACTTAGATACTTATATAGAACCAAGATTGGGATTAGTAGTTTTTCTTTTTTGTAG AGTAACTTCTAATAGAAAAGAAAGTATGGAGAAGATTATGGCCTAAAAACTGTGGTAGGATATG ATACATCATGGCTTGGATGGGTACGAAAAATCCAAGTTGTAGACTAGCTTTCCGAGATTATTGA GGACTGATCATGTGGCGTTTAATTTATGAGTGTTTTGAGAAATATAAACATGGGGCATGTGTAT CGCAATGTTAATGTAACCAAATATAGGTGCTTCATATAATCAATAATTTGGTGATATTATTTTT CTTTGCAGGTTTGACAGGAAACTGAAGAATACCTATGATCACTTACTTTTTAGCAGGTCCTTTG TTTATTCATATTTAACTTTCTGCATTTGGTGATAGAACGGTTTTTGTATCTCATAATGCATTTT TGTTATTTGATAGAAGGTTGTTCTTGGGCGAACTATATAATCCCCTTCCTCCACAAAATAATTA TAATAATAAGGAAAAAGAGGAAACTAATCAAGTGAAACCAGAAAGCTAGTGCAAAAACATGCTA AATTTAATATCTTGGGTAGTAAGATTACACGATGCTTTTATTGATTTTACCCTTGACGCTAAAT ATTTTCTATTTCTTTACCTCAATGCAGGAGTCCGCTTCTTAGTGTTTATGCGGACATGTCAGTT ACATGTAAGGTATAATTACTTACAACTGAGGCTGTTTTTATTTCGGTGGGTTTTGATCCAACTC ATGAGCATAGCCCTAAAAATTTTATATTTCCATTTTTAATATTGGGAAATCTCACCTTCAAGTA TTTGTGAGCATATCCTCACAAGAATAAGATATGAATATATTGAAATATGATGATGAAGAAATAC AAGATAAATCCAAGTATATAAAGGAACTTGGAATCTTTCTCTTGAGTGTACTCACCCAAGCCCT AGAACACTCCACAAGTAGTCCACCCTTCACTCACTCACCCTCTTTCTATCTTTAACAACATTCA GCACCCTTATTCCCCTTTACGGCTATCTAAGTACCTAAAAGTATTCTCCTAGTCTTGGCACATC TGGTAGCAATTCAAAATACTCGTATCTCACATTTTCATGGACATATAAGAATATTTACTTTACT GTTTTATAAATCATTTGTCTTCAACCCAAGGGCCTTTATTTCTTCCCCTTTCTGTCTTTCTTCT ATAGATATGTAAATATGGCCAGATTGTTAAAGCACTACTTTTGTCATTCAAGCAAGATATATGC AATTCCTTTATTGTATGCATATCAATATATCAGGTTCCCAATAGTTCTGTTAAGGGTCTGTTGT TTCTCTTATTTCCATCTTTTGGGAATTACAAAAAGTTAAATTTGATTTATGGTGTAAGAGAATG AAATTAAATGCAATCAACTATGCATTTGGTTAATCATTGTCTCAAGTCTTTAAATTCTCATTCT CTTGCAATATGGGTTTGTTCTGTCCTTGCTTTCCGACTTTGGTTCCTGGAGCTTCTCTAATCAG CAATTGCAGTATGTAGTGCTACCAATGGTCTTTAAATTTCTCATTCTTTTGATATCCTCATCAC TGGTAGTTTAGTATGCTCAGCAGTAATATTCTCTCGTGCTTTTCTGATACAGGAATATTATAAC CCAAACCAGTCCATGTTGGAACTAGTCTTCGCACCTGCAGAAGAGTGGATTTCTCGGAGTGACT CGGACATTATTGATGCGACAATGGTGGAACTAGCTAAACTATTTCCTGACGAAATTTCTGCTGA TCAGAGCAAAGCTAAGATCGTGAAGTACCACGTTGTTAAAACCCCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.47466438

Conservation Information
Conserved circRNAs	NA
PMCS	0.47466438

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							1640698-1640673(+)
						
						Potential amino acid sequence
						
							MSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCEPIVEHIQSLGGEVRLNS
RIQKIELNNDGTVKRFSLNDGNVIEGDAYVFATPVDILKLLLPDDWKAIPYFKKLEKLVGVPVI
NVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYYNPNQSMLELVFAPAEEWISRSDSDI
IDATMVELAKLFPDEISADQSKAKIVKYHVVKTPREYLIV*
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to salt stress in root

Functional Information
Coding potential	Y
Potential coding position	1640698-1640673(+)
Potential amino acid sequence	MSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCEPIVEHIQSLGGEVRLNS RIQKIELNNDGTVKRFSLNDGNVIEGDAYVFATPVDILKLLLPDDWKAIPYFKKLEKLVGVPVI NVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYYNPNQSMLELVFAPAEEWISRSDSDI IDATMVELAKLFPDEISADQSKAKIVKYHVVKTPREYLIV*
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to salt stress in root

			
						 Other Information
					
						References
						Zhu et al., 2019

circRNA

Detail information of Csa4G011080_circ_g.1

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