Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | BGIOSGA001202_circ_g.3 |
| ID in PlantcircBase | osi_circ_002212 |
| Alias | 1:27581503|27584560 |
| Organism | Oryza sativa ssp. indica |
| Position | chr1: 27581503-27584560 JBrowse» |
| Reference genome | Oryza_indica.ASM465v1.42 |
| Type | e-circRNA |
| Identification method | find_circ |
| Parent gene | BGIOSGA001202 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | BGIOSGA001202_circ_igg.1 BGIOSGA001202_circ_igg.2 BGIOSGA001202_circ_g.1 BGIOSGA001202_circ_g.2 BGIOSGA001202_circ_g.4 BGIOSGA001202_circ_g.5 BGIOSGA001202_circ_g.6 |
| Support reads | NA |
| Tissues | leaf |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | BGIOSGA001202-TA:8 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
27584468-27581505(-) 27584441-27581504(+) |
| Potential amino acid sequence |
MTEDQFDFHSYCLRKMTLRAYVSMLKFQDRLHAHEYFHKAAAGAIRCYMKLHDSPSKSSTEEND EMSKLPPAQRKKLRQKQKKAEARAKREAEEKQEDETTSSHTSKSGKKQNARPVDLDPHGEKLVQ IENPLAEGTKYLKLLQNNSSDSLETHTLSFELNMRKQKILLAFQAVKQLIKLDENSPDSHRCLI RFFHKINNLPSPGTDSEKLIWNVLEAERPDLRQLHGKSLVEVNRSFLEKHSASLTHRAAAAEMM YLLEPDKKLEAIKLIEDSVNSTASGYELASGESYYRQGDLGRALKNFLAVEKHYADMTEDQFDF HSYCLRKMTLRAYVSMLKFQDRLHAHEYFHKAAAGAIRCYMKLHDSPSKSSTEENDEMSKLPPA QRKKLRQKQKKAEARAKREAEEKQEDETTSSHTSKSGKKQNARPVDLDPHGEKLVQIENPLAEG TKYLKLLQNNSSDSLETHTLSFELNMRKQKILLAFQAVKQLIKLDENSPDSHRCLIRFFHKINN LPSPGTDSEKLIWNVLEAERPDLRQLHGKSLVEVNRSFLEKHSASLTHRAAAAEMMYLLEPDKK LEAIKLIEDSVNSTASGYELASGESYYRQGDLGRALKNFLAVEKHYADMTEDQFDFHSYCLRKM TLRAYVSMLKFQDRLHAHEYFHKAAAGAIRCYMKLHDSPSKSSTEENDEMSKLPPAQRKKLRQK QKKAEARAKREAEEKQEDETTSSHTSKSGKKQNARPVDLDPHGEKLVQIENPLAEGTKYLKLLQ NNSSDSLETHTLSFELNMRKQKILLAFQAVKQLIKLDENSPDSHRCLIRFFHKINNLPSPGTDS EKLIWNVLEAERPDLRQLHGKSLVEVNRSFLEKHSASLTHRAAAAEMMYLLEPDKKLEAIKLIE DSVNSTASGYELASGESYYRQGDLGRALKNFLAVEKHYADMTEDQFDFHSYCLRKMTLRAYVSM LKFQDRLHAHEYFHKAAAGAIRCYMKLHDSPSKSSTEENDEMSKLPPAQRKKLRQKQKKAEARA KREAEEKQEDETTSSHTSKSGKKQNARPVDLDPHGEKLVQIENPLAEGTKYLKLLQNNSSDSLE THTLSFELNMRKQKILLAFQAVKQLIKLDENSPDSHRCLIRFFHKINNLPSPGTDSEKLIWNVL EAERPDLRQLHGKSLVEVNRSFLEKHSASLTHRAAAAEMMYLLEPDKKLEAIKLIEDSVNSTAS (-) MEVKLIFSHVSIMLLNSQEIFESPAEITLTIVTLTRSKLIP*(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Huang et al., 2021 |