Detail information of BGIOSGA001202_circ_g.3


General Information
CircRNA Name BGIOSGA001202_circ_g.3
ID in PlantcircBase osi_circ_002212
Alias 1:27581503|27584560
Organism Oryza sativa ssp. indica
Position chr1: 27581503-27584560  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA001202
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001202_circ_igg.1 BGIOSGA001202_circ_igg.2 BGIOSGA001202_circ_g.1 BGIOSGA001202_circ_g.2 BGIOSGA001202_circ_g.4 BGIOSGA001202_circ_g.5 BGIOSGA001202_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA001202-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTCATGTCAGCATAATGCTTCTCAACAGCCAAGAAATTTTTGAGAGCCCTGCCGAGATCACCT
TGACGATAGTAACTCTCACCAGAAGCAAGCTCATACcctgatgctgtgctgtttactgaatctt
caattaatttgattgcctcaagcttcttatctggttccaagaggtacatcatttcagctgctgc
tgctctgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGATGCTGTGCTGTTTACTGAATCTTCAATTAATTTGATTGCCTCAAGCTTCTTATCTGGTT
CCAAGAGGTACATCATTTCAGCTGCTGCTGCTCTGTGCGTCAAAGAAGCTAGCAAAACACATAA
TTGTTGATAAAGTAAGACCTCTGTGCTTGTATTTGCGTTACTTCAACAAGGCATAAAAATAATA
ATAAAGGTATACCACTGTGCTTTTCAAGGAAACTTCTATTTACTTCAACAAGAGACTTCCCATG
CAACTGCCTGCAATAACTTGCAAGTCAAATAAACCGAAAGAAGTGCATATTGGCAATGCAAAAA
CCAGCTTAACCTTAAATCTGGACGCTCAGCTTCCAAAACATTCCAAATTAGCTTTTCAGAATCT
GTCCCTGGAGAGGGAAGATTGTTTATCTTGTGGAAAAACCTTATCTACAAAATCCAACATCAAG
CAGTAATAAATTATAAACAACCAAGTTGAATGGATATAATTGAAATCGTTTTTAAAATATTAAA
AAAGCAAGGAAAACTGAATAAATGTATGCACTCCATGCCAAATTCTTCTATTCCGATTTGACTA
ACTGTCAAATAGTATACCCTAAGCACCCTAAGAATGATGCTTACAAAACATCCCACTATTCTCC
AAAAATGACAAACTAGGAGCACACAAAGGTTGTCAAGGTAGGATGTTGACATTCAACTCCCAAA
CAAAATACTTTTGAGCTTTGAATCAAAGATATGTGACCCTGATCTTATATGAAACTAAGAACTT
ATGAATTTCTCAACTTTGCAATGTTGTATTAGTTCCTAACTGGGTGTTACTAGCACATAATGGA
CAGTGAATTTTGCTTGTCAACTTCCACCTGAACCAACATAAACATGAGCAGAAGGTATGCTAAT
TGAAATGCGCCCAAGGTCTACAGTCAATGACAGTACATATAGCAACATGAATAAGAAATGTGCA
TTCCACATTTCCAGTAAAGAAAATATCTTGCCAAGCAAATGTAAAATTGGATCATATTTTTCTG
TGGACCAAAGATGTCACTCAAGGCATTGATCTCAGGCCCATAAATAGACTTACAAAGGAAAAAT
CACTCTGAAATCTAACTAGTAGGTACAGTACATAATTTACAGGTCGAACAAATTTTATCACGAC
TGACAGAATATACAAATGAATAGCTTAAGTGAAAACCATATTTTTTATACTCACCAAACAACGA
TGACTGTCAGGGCTATTTTCATCCAACTTAATGAGCTGCTTGACTGCCTGGAATCAAAGAAAGA
TAAAAACATAAATATATAACAAAGAAATGTCCATTTAAGATAATATAGCTATTCATTGTTCATT
AATACTGCCTTACTTGTGCCAAATACTGTTAAAATAATTAAAGCTTCGACCAACTATGTAGGTT
GCTACATGAAAGTCTTAAGTTGGCACAGTTGAACAATAGATGTATCACTCTTTGTTTCAATAAT
ATTTTTTTTGAAAAGTATTACAATGTTATCGTAAGGGTTGAATGCGAAAAGGTGTGTATTAAAG
ATACTCTATGGCTGAAACAACAGTTAATTGCAAAAGAAAAGTAGTGTGTTAAAGCATTTGCAGC
ACAGAACTCACTGTGTTCCATTTTTCAAGCATCCTGCCCAAATTAATGTCCAGTGGTTTCAAAT
CAATGCCATATACATTTCATTTTACCATGACAGACAAAGTAAATATGATGTAATTTTTGCTTCA
AAAATCAAATCATTTCTTGCATAGTTTATTAATATACACGCTGCTATAGTTAAGGCGTATTTAG
TTGAAATAGCATTGCCAGGATGAACAATAAGTTCATTAGGCAATTCTGATATTTCATAAGCATA
AAATGTAAATATACTTCAACTATTAGTTGTGGGAGTCCAGATATTCCACAGAGGAGAATTCACA
TCTCGGTATATATTTTTTGTCAAGGACACAGTTTTATGAGCATCAAAGATTTAGCTAAGCAAAG
AGGTTTCCATAGTTACAATCAGAAAAGCGTATGCTAACTGGATAAGCTTGCCATCAGCAAGGAG
AAGGGCAAAACCGCAAAACCGAAGCTCCAGATATTCCGAAATAATTAGATATATTGTAATGGCC
ACATTTACGCAATAGGAAAGAAACTAAATACCTGAAAAGCAAGTAAAATCTTTTGTTTTCTCAT
GTTGAGTTCAAATGAAAGTGTATGAGTTTCCAACGAGTCTGATGAGTTATTCTGCAGAAGCTTC
AAATACTTTGTTCCTTCAGCAAGTGGGTTTTCAATCTGCAAAAGAGGTACATAAATTACGAAAA
TAAGAATAGCAGATCCATCTTCAAGACTCTAGCTTGCATTATGCAGGCATGGATTAAACGAAGA
ACAAAAAAAGCACAGTGATAAATTGACTAAGCAAAAGCATGAGTGATGAATACCTGCACTAACT
TTTCACCATGTGGATCTAAATCAACTGGTCTTGCGTTTTGTTTCTTCCCAGATTTTGAAGTGTG
AGATGAAGTTGTCTCATCCTCCTGTTTCTCTTCAGCCTCCTGCAAAAATTTGTGGGAAGAATCA
AAATATGTAACAGCTATTGACTCAATACTGAGCTTTCAAGGTTTACCCTTTTGGCACGAGCTTC
TGCCTTTTTCTGTTTTTGTCTCAGTTTCTTCCTCTGAGCAGGTGGCAATTTCGACATTTCATCA
TTCTCCTCAGTGGATGATTTTGATGGTGAATCATGCAATTTCATATAACACCTACAATATATGC
AGCTCAGTTTTATCAGACTGCCAAATGAAGTACATAAAACTACTAAAAGGAAAAAAGTTCAGTG
GCATCTCCTACCTGATAGCTCCTGCTGCAGCCTTGTGGAAATATTCATGAGCATGCAAGCGATC
TTGAAACTTCAGCATAGAAACATATGCCCTTAGTGTCATTTTCCGTAAGCAATACGAATGGAAG
TCAAATTGATCTTCAGTCATGTCAGCATAATGCTTCTCAACAGCCAAGAAATTTTTGAGAGCCC
TGCCGAGATCACCTTGACGATAGTAACTCTCACCAGAAGCAAGCTCATAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 27584468-27581505(-)
27584441-27581504(+)
Potential amino acid sequence MTEDQFDFHSYCLRKMTLRAYVSMLKFQDRLHAHEYFHKAAAGAIRCYMKLHDSPSKSSTEEND
EMSKLPPAQRKKLRQKQKKAEARAKREAEEKQEDETTSSHTSKSGKKQNARPVDLDPHGEKLVQ
IENPLAEGTKYLKLLQNNSSDSLETHTLSFELNMRKQKILLAFQAVKQLIKLDENSPDSHRCLI
RFFHKINNLPSPGTDSEKLIWNVLEAERPDLRQLHGKSLVEVNRSFLEKHSASLTHRAAAAEMM
YLLEPDKKLEAIKLIEDSVNSTASGYELASGESYYRQGDLGRALKNFLAVEKHYADMTEDQFDF
HSYCLRKMTLRAYVSMLKFQDRLHAHEYFHKAAAGAIRCYMKLHDSPSKSSTEENDEMSKLPPA
QRKKLRQKQKKAEARAKREAEEKQEDETTSSHTSKSGKKQNARPVDLDPHGEKLVQIENPLAEG
TKYLKLLQNNSSDSLETHTLSFELNMRKQKILLAFQAVKQLIKLDENSPDSHRCLIRFFHKINN
LPSPGTDSEKLIWNVLEAERPDLRQLHGKSLVEVNRSFLEKHSASLTHRAAAAEMMYLLEPDKK
LEAIKLIEDSVNSTASGYELASGESYYRQGDLGRALKNFLAVEKHYADMTEDQFDFHSYCLRKM
TLRAYVSMLKFQDRLHAHEYFHKAAAGAIRCYMKLHDSPSKSSTEENDEMSKLPPAQRKKLRQK
QKKAEARAKREAEEKQEDETTSSHTSKSGKKQNARPVDLDPHGEKLVQIENPLAEGTKYLKLLQ
NNSSDSLETHTLSFELNMRKQKILLAFQAVKQLIKLDENSPDSHRCLIRFFHKINNLPSPGTDS
EKLIWNVLEAERPDLRQLHGKSLVEVNRSFLEKHSASLTHRAAAAEMMYLLEPDKKLEAIKLIE
DSVNSTASGYELASGESYYRQGDLGRALKNFLAVEKHYADMTEDQFDFHSYCLRKMTLRAYVSM
LKFQDRLHAHEYFHKAAAGAIRCYMKLHDSPSKSSTEENDEMSKLPPAQRKKLRQKQKKAEARA
KREAEEKQEDETTSSHTSKSGKKQNARPVDLDPHGEKLVQIENPLAEGTKYLKLLQNNSSDSLE
THTLSFELNMRKQKILLAFQAVKQLIKLDENSPDSHRCLIRFFHKINNLPSPGTDSEKLIWNVL
EAERPDLRQLHGKSLVEVNRSFLEKHSASLTHRAAAAEMMYLLEPDKKLEAIKLIEDSVNSTAS
(-)
MEVKLIFSHVSIMLLNSQEIFESPAEITLTIVTLTRSKLIP*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021