Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os06g0527100_circ_g.2 |
ID in PlantcircBase | osa_circ_031057 |
Alias | NA |
Organism | Oryza sativa |
Position | chr6: 19547038-19550783 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os06g0527100 |
Parent gene annotation |
Similar to Cyclic nucleotide-gated channel A (Fragment). (Os06t0 527100-01) |
Parent gene strand | + |
Alternative splicing | Os06g0526400_circ_ag.1 Os06g0526400_circ_ag.2 Os06g0526600_circ_g.1 Os06g0526600_circ_g.2 Os06g0526600_circ_g.3 Os06g0526700_circ_g.1 Os06g0526700_circ_ag.1 Os06g0527100_circ_g.1 Os06g0527100_circ_g.2 Os06g0527100_circ_ag.1 Os06g0527100_circ_ag.3 Os06g0527100_circ_ag.4 Os06g0527100_circ_g.5 Os06g0527100_circ_g.6 Os06g0527100_circ_ag.7 Os06g0527100_circ_igg.1 Os06g0527100_circ_g.2 Os06g0527100_circ_igg.3 Os06g0527100_circ_igg.4 Os06g0527300_circ_g.1 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os06t0527100-01:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.224062996 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
19547070-19547040(+) |
Potential amino acid sequence |
MSPRRHNALSSLKERTAGVFAFLGNLVHSETLKRLVLHERKLTTRTLHPQGPFLQSWNKIFVLS CIFAVSVDPLFFYIPVINDNNTCWYLDKKLEITASVLRFFTDIFYILHIIFQFRTGYIASSLTT FGRGVLVEDRYAIAKRYLSTYFLIDVFAVLPLPQVVILVVLPNLGGSEVTKAKNILMFIVICQY VPRLIRIRPLYLQITRSAGVITETPWAGAVLNLLIYLLASHVLGALWYLLSIERKDACWRDMCS NNSTVCNQAYLYCGDKENSILRTACLPIDSNDIDPNFGIYVPALNNVSQSTNFLAKLFYCVWWG LQNLSSLGQNLKTSTYAWENLFAVFVSISGLVLFALLIGNVQTYLQSAHLREEEMRVKSRDTDQ WMSYRLLPENLKERIRRHEKYRWHQTSGVDEELLLMNLPKDLRRAIKRHLCLSLLMRI*(+) |
Sponge-miRNAs | osa-miR827 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |