Detail information of Os06g0527100_circ_g.2


General Information
CircRNA Name Os06g0527100_circ_g.2
ID in PlantcircBase osa_circ_031057
Alias NA
Organism Oryza sativa
Position chr6: 19547038-19550783  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0527100
Parent gene annotation Similar to Cyclic nucleotide-gated channel A (Fragment). (Os06t0
527100-01)
Parent gene strand +
Alternative splicing Os06g0526400_circ_ag.1 Os06g0526400_circ_ag.2 Os06g0526600_circ_g.1 Os06g0526600_circ_g.2 Os06g0526600_circ_g.3 Os06g0526700_circ_g.1 Os06g0526700_circ_ag.1 Os06g0527100_circ_g.1 Os06g0527100_circ_g.2 Os06g0527100_circ_ag.1 Os06g0527100_circ_ag.3 Os06g0527100_circ_ag.4 Os06g0527100_circ_g.5 Os06g0527100_circ_g.6 Os06g0527100_circ_ag.7 Os06g0527100_circ_igg.1 Os06g0527100_circ_g.2 Os06g0527100_circ_igg.3 Os06g0527100_circ_igg.4 Os06g0527300_circ_g.1
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0527100-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAGACGAGCGGGGTTGATGAAGAACTCTTGCTTATGAACCTCCCCAAGGATCTTAGGAGGGCT
ATAAAACGGCATCTTTGCTTATCACTTCTTATGAGGatttgaggactggagatctgagcagtca
gttatgtcaccacggaggcataatgctttaagttcacttaaagaaagaactgctggagtttttg
cattccta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTTGAGGACTGGAGATCTGAGCAGTCAGTTATGTCACCACGGAGGCATAATGCTTTAAGTTCA
CTTAAAGAAAGAACTGCTGGAGTTTTTGCATTCCTAGGAAACCTTGTGCATTCTGAAACCTTAA
AGAGATTGGTGCTGCATGAAAGGAAGTTGACAACTAGAACTCTTCATCCTCAGGGACCATTTCT
GCAAAGCTGGAACAAGATATTTGTTTTGTCATGTATCTTTGCAGTTTCTGTGGACCCATTGTTC
TTCTATATTCCGGTTATCAATGACAACAACACATGCTGGTATTTGGATAAAAAGTTGGAAATCA
CAGCAAGTGTCCTGCGCTTTTTCACAGATATCTTCTATATACTCCATATCATATTTCAGTTCAG
GACAGGTTATATTGCGTCTTCTCTTACAACTTTTGGTCGGGGTGTCTTGGTTGAGGATAGATAT
GCAATAGCAAAGCGATACTTGTCAACATATTTTCTGATCGATGTCTTTGCTGTTCTACCCCTCC
CTCAGGTACTCCGCATACCATGTACTTAGTTAAGCTCAGTATGGAACTATTTCATAGTATAGTT
CACATGATTCTTTAGAATTATGATGGTATGTTGGTGATATACATATAAATTATGATTAGTGGAT
GCACCTTTGATAGTCCCTACATGAGAAAAATAATAGATATTCACCTCTTTTATGATTTATAATG
ATATAATGGAATTCACATATTGGTATCATGGGATGATTAGTAAGGATGCACTTTTGGTAGATAC
CACATCAGAAAAATAAAAGATTTTGATTTTACTCTGATACATGCAATTCACATGTTAGAAAAAT
GGGGTCATATACAAAGAGCTCTGTCTGTTTCTTCTATGACTTTGCAGTCTTAATAGTGCACTAA
GTTATGCGCCTTTGATTTCTCAGTCAAGCTTGTAAGCATGGTCAATTTTGTTACCAGGTGGTTA
TTTTGGTTGTGCTACCTAATCTTGGAGGCTCAGAGGTTACAAAAGCCAAAAATATCTTGATGTT
TATAGTTATATGCCAATATGTGCCTCGGCTGATCCGAATAAGGCCACTGTATCTCCAAATCACA
AGGTCTGCTGGGGTAATTACAGAGACACCATGGGCTGGTGCTGTTTTGAACCTTTTAATTTACT
TGCTCGCCAGTCATGTAAGTATTCTATTCAATAACTCTGGATAGTCAACAATGCCAAATCAACT
GTCCTTTGCTAGAGCAATATTTAACTGCAATAGTGGAAAGCTGAAAACATGATCAATTTCCTGT
AAAGATTACATGAATTTATTATTGATCAAAATAAATTCGGCTAACCTGGTTGATGTGTGGTATG
GGTGGAATAGCACTTGTGTAGTCTCATTTTTTTTTATTTTTTGCCAAACCAGAGCCATAAACAC
CTCTTGTTTTGTGGTTTTCATCAGCAAAGTTGTCTAAATTTGTATACAGAAAGCAATGGTGTAA
CCTTTAAAGGTTTATTTTACTTAAGTTACATAAGTATTATAAGGAAAAGGATTTTGTCCAACAT
TTTCTCGATCCATTTCTCTGCGAGAGAAACAAAATTTTAGTTTGTCCAATCTGAAATACACTCT
AATTGTAACAGTATAAATTATTAGTTTATATCAGCTATCATGTACCAAATATTTTCAATGAAAT
TTGATACTTAGCGCTTAGTAGTTCATCCTGTTTCTCGTGGGTCAATTCTCAAGAGATATTCTAT
CACATATACACCAATTTCAATGTCATCAATGCATATTTGTAACAATGTTGTCCAATTTTTCTAT
GATTCTATTTACATGCTTTATTGGCTCTATATCTGTTTCCTGATGGGTGTCATTTAGGAAGTCA
TAACAGTCAAGATTTACAAAATAAAAGTCGTAATATTGGTAAGAAAATAATATGCATGGATTTT
GTTTTCTGTAAAAAAAATGGCTATAATATCCTTATGGGTAACAACACTTTGGTCTCTCAAGTTT
TGCTTGAGGCTCCTGTTGGGCTCTGATGTATCATCCAGATGTGTGTGTGTCCTCAAATTTTCCT
CATTAAAAATTAAAATTGGATCCACCGGGAGCAGCGCCTGTACAGGACTAATCGGTGTTGACCC
TTGATCTCTTGGCTTGGCCAATTCGTTTGATATGCATGTCCTTGTAGTGCTTCAACTGGTTCAA
AGGAGTAAGGACAATCATGACCCATAGTCGGAAAACTTGGAGGACTGGGTGGATAAATTGGAAT
GTCATGGACAATCACAACCAAAGAATGGCCTATGAAACTTGACTTCATACTACTAAATTGGCAA
ATAATTAAAATATTAGTGGCCCATGCAACCATCTAGTTGACTTCATTCATAAGTGGGATACTTT
TGCAACTGCAGTGCCACTAAATTGGATATAATTAAATATTTCCATGCACCTTATATATTTATGA
CAAATCTTTGAACTGCTGCAGGTCCTTGGAGCACTCTGGTACTTGCTTTCCATTGAACGCAAAG
ATGCCTGCTGGAGAGACATGTGTAGTAATAATAGTACAGTCTGTAATCAGGCATATTTGTACTG
TGGGGATAAGGAAAACTCGATCTTACGGACTGCTTGCCTTCCAATCGACTCAAACGATATAGAT
CCGAACTTTGGAATTTATGTGCCAGCTCTAAATAATGTCTCGCAATCAACTAATTTTTTGGCAA
AACTATTCTATTGTGTTTGGTGGGGTCTGCAAAATCTTAGGTTTGTGCAAAACAGAAACATTTA
AAGTATTTTCTGCTTGAACCAATAAACTTCTCTATGCCACCTATATTTATGTGTTGGTCTATTT
AATGCAGCTCTCTGGGCCAAAACCTTAAGACAAGCACTTATGCATGGGAGAATCTGTTTGCAGT
TTTTGTCTCAATATCAGGCTTGGTTCTGTTTGCACTGCTAATTGGTAATGTGCAGGTACGCATA
TTTAGCTTCATTGGCTATTAATTTTACAAGTCATTTTCTTGATTTATGTTATTATTCAAGCTTT
TCATAATAGAACTTGCATTGCAAATCAGAAATATGCTAAAATTTTAAGTGTGTTATGTGTCTAA
TGCCTACATAATCAATTGAAGAGAACATGAATGCTATATACTGCTGCTAAAGATATACCCCAGA
ACAACAGAGAATATTTTTATGAGTGAATTATGGAAAACTTAAAAATAATAAATCAAATTAATTC
TGAGAAAAATGAGTCCAACTTATTTTATCTCCTAGGGATATGAAACTAAAGATATGGAACCTTG
TGCTAGGTTTCGAGTGTTCATTCCAATACCATTTGGAGATAAGACTAGCATAATCTTGGTAGGA
ATAAGATCATCAGTCCTTATTTGCAACAGTAGTCTTTGTACAAAATGGTTCAGGTCTTGTACTA
CAAAGAATGTTTCACAGGATCCCTGACATTGAATGAAATTAGGTGTTTTTGCTGCGTAATGATA
AATGCGTAATTTGGGTAGCTAACTCATCCTTCCATTTTTTGTGACTTCTACAGACCTATTTGCA
GTCAGCCCATCTGAGAGAAGAAGAAATGAGAGTGAAAAGCCGTGATACAGATCAATGGATGTCA
TATCGACTGCTTCCTGAGAATCTCAAGGAACGAATACGTCGTCATGAAAAATATAGATGGCACC
AGACGAGCGGGGTTGATGAAGAACTCTTGCTTATGAACCTCCCCAAGGATCTTAGGAGGGCTAT
AAAACGGCATCTTTGCTTATCACTTCTTATGAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.224062996
Functional Information
Coding potential Y
Potential coding position 19547070-19547040(+)
Potential amino acid sequence MSPRRHNALSSLKERTAGVFAFLGNLVHSETLKRLVLHERKLTTRTLHPQGPFLQSWNKIFVLS
CIFAVSVDPLFFYIPVINDNNTCWYLDKKLEITASVLRFFTDIFYILHIIFQFRTGYIASSLTT
FGRGVLVEDRYAIAKRYLSTYFLIDVFAVLPLPQVVILVVLPNLGGSEVTKAKNILMFIVICQY
VPRLIRIRPLYLQITRSAGVITETPWAGAVLNLLIYLLASHVLGALWYLLSIERKDACWRDMCS
NNSTVCNQAYLYCGDKENSILRTACLPIDSNDIDPNFGIYVPALNNVSQSTNFLAKLFYCVWWG
LQNLSSLGQNLKTSTYAWENLFAVFVSISGLVLFALLIGNVQTYLQSAHLREEEMRVKSRDTDQ
WMSYRLLPENLKERIRRHEKYRWHQTSGVDEELLLMNLPKDLRRAIKRHLCLSLLMRI*(+)
Sponge-miRNAs osa-miR827
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017