Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d027665_circ_g.8 |
ID in PlantcircBase | zma_circ_000536 |
Alias | circ2492 |
Organism | Zea mays |
Position | chr1: 10549888-10551008 JBrowse» |
Reference genome | AGPv4.38 |
Type | ui-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d027665 |
Parent gene annotation |
Protein SHOOT GRAVITROPISM 6 |
Parent gene strand | + |
Alternative splicing | Zm00001d027665_circ_g.2 Zm00001d027665_circ_g.3 Zm00001d027665_circ_g.4 Zm00001d027665_circ_g.5 Zm00001d027665_circ_g.6 Zm00001d027665_circ_g.7 Zm00001d027665_circ_g.9 |
Support reads | 10 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d027665_T029:5 Zm00001d027665_T013:5 Zm00001d027665_T012:5 Zm00001d027665_T005:5 Zm00001d027665_T014:5 Zm00001d027665_T030:5 Zm00001d027665_T017:5 Zm00001d027665_T038:5 Zm00001d027665_T019:4 Zm00001d027665_T039:2 Zm00001d027665_T024:5 Zm00001d027665_T009:5 Zm00001d027665_T033:5 Zm00001d027665_T018:5 Zm00001d027665_T028:5 Zm00001d027665_T007:5 Zm00001d027665_T015:5 Zm00001d027665_T032:5 Zm00001d027665_T023:5 Zm00001d027665_T037:5 Zm00001d027665_T026:5 Zm00001d027665_T004:5 Zm00001d027665_T010:5 Zm00001d027665_T031:5 Zm00001d027665_T001:5 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.1915135 |
Functional Information | |
---|---|
Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chen et al., 2017b |