Detail information of Zm00001d027916_circ_g.1


General Information
CircRNA Name Zm00001d027916_circ_g.1
ID in PlantcircBase zma_circ_000548
Alias circ2496
Organism Zea mays
Position chr1: 17551002-17551350  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d027916
Parent gene annotation Phosphoinositide phosphatase SAC2
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered Zm00001d027916_T002:2
Zm00001d027916_T008:2
Zm00001d027916_T006:2
Zm00001d027916_T013:2
Zm00001d027916_T005:2
Zm00001d027916_T014:2
Zm00001d027916_T011:2
Zm00001d027916_T003:2
Zm00001d027916_T007:2
Zm00001d027916_T009:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCCAACCTCAGCAAGGGAAACCTGCATTGTGGAAGCTGGACTCAGATCAGCATTACAACAT
TGGGAGGCAAGGAACTTTAAAAGAAGAGATTGGAAGgatcttctgtgagcaaaggggccaatgg
aaggcaacaacccaatctcaggagttccttcgaacccttcaacgctactacaataacgcctaca
ctgatcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATCTTCTGTGAGCAAAGGGGCCAATGGAAGGCAACAACCCAATCTCAGGAGTTCCTTCGAACC
CTTCAACGCTACTACAATAACGCCTACACTGATCACGAGAAGCAGGATGCTATAAACATGTATG
CTTCTGAATATATTGCAAAATAATATTCTGTTGGAATGACTTAACCAGTGGAAAACATTGATAT
TTGTATGTTCATCACAAAATAGCTTACTCGTCCTTAAAAAATGCAGGTTCTTAGGTCATTTCCA
ACCTCAGCAAGGGAAACCTGCATTGTGGAAGCTGGACTCAGATCAGCATTACAACATTGGGAGG
CAAGGAACTTTAAAAGAAGAGATTGGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.158333596
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b