Detail information of BGIOSGA033352_circ_g.1


General Information
CircRNA Name BGIOSGA033352_circ_g.1
ID in PlantcircBase osi_circ_008644
Alias Chr10:22633712_22634355(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 19747337-19747980  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA033352
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   AC-CA
Number of exons covered BGIOSGA033352-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATTAATTGTTTGTCTTATCCATGCTAAGTATGGTTGTATTCCTGCTCAGATTTAAAATGACA
GATAATAGATTTTTGTTAACTGATCTTGTGTTAAAAggtaaggggattgggattcgcagctccc
gctcttccgattagagagtagcaattgcccgtgcaatgtgtatgtgtgcccaagggataccaat
tctcaact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAAGGGGATTGGGATTCGCAGCTCCCGCTCTTCCGATTAGAGAGTAGCAATTGCCCGTGCAA
TGTGTATGTGTGCCCAAGGGATACCAATTCTCAACTCTGTAATGCAGAGAAACTATGCGGCGTT
GTCTAACATTAACATCGGTAGGTATAGTAACAGCAGATCCTAATTTATTTAGTTCATGCAAAAT
ATGCTGTTGGGGAAATGGAGGAGATTGTTACGAATTGGAGATTGTCGGGGAGGGATGGGTGTAC
AACTTGGTGGTACTCGATTAGACAGTAGCCAAGAAGTTTTACTAGAGAGTAGCAGTTGTGCTGA
ACTCAAATTCAGGGTGTTTTATTTTGTTAGAGGGCTAGTGAGTAGAGCTGCAGCTTAGCAGGAG
GGATAGCATTTCTTGGAGGTGCTAATTCTCTTGGCTGTATGTTATAACATTAGGGACTTGATTT
CAGAACTAGATGAACTGATAAAGAACAATAATAAGCTAGGGCCGATGTGCCTTTATGTGAAATA
GATGAGATTTGCTCACAAGTCACAACTTACTTAAATTAATTGTTTGTCTTATCCATGCTAAGTA
TGGTTGTATTCCTGCTCAGATTTAAAATGACAGATAATAGATTTTTGTTAACTGATCTTGTGTT
AAAA
Conservation Information
Conserved circRNAs osa_circ_007815
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021