Detail information of AT3G09980_circ_g.3


General Information
CircRNA Name AT3G09980_circ_g.3
ID in PlantcircBase ath_circ_020746
Alias Ath_circ_FC3135
Organism Arabidpsis thaliana
Position chr3: 3070253-3070540  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder, CIRI-full
Parent gene AT3G09980
Parent gene annotation Ankyrin repeat 30A-like protein (DUF662)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G09980.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATTTACGCAACTTGCAGGAACGAGAGTACAAAGAAGCTCTTGAAGCATTCAACGAAAAGAAC
AGGGAGAAGGTGCAGCTAATCACCAGGCTAATGGAGgaacttgaaggattagctgatcccatga
ggaaagaagttgctatggttaggaagaagattgattctgtcaacaaagaattaaagccattggg
ccatacag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 192
Transcript exons: 3070253-3070540
GAACTTGAAGGATTAGCTGATCCCATGAGGAAAGAAGTTGCTATGGTTAGGAAGAAGATTGATT
CTGTCAACAAAGAATTAAAGCCATTGGGCCATACAGTTCAGAAAAAGGAACGAGAGTACAAAGA
AGCTCTTGAAGCATTCAACGAAAAGAACAGGGAGAAGGTGCAGCTAATCACCAGGCTAATGGAG

Genomic sequence GAACTTGAAGGATTAGCTGATCCCATGAGGAAAGAAGTTGCTATGGTTAGGAAGAAGATTGATT
CTGTCAACAAAGAATTAAAGCCATTGGGCCATACAGTTCAGAAAAAGGTAAGGCTAAAACATAA
TCAAATCCATTGACCTGTGTTTAAAATATGTTTTGTTGAGGATTCAGATGCTAAGCTGGTTTAT
TTACGCAACTTGCAGGAACGAGAGTACAAAGAAGCTCTTGAAGCATTCAACGAAAAGAACAGGG
AGAAGGTGCAGCTAATCACCAGGCTAATGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.225356832
Functional Information
Coding potential Y
Potential coding position 3070277-3070537(+)
Potential amino acid sequence MRKEVAMVRKKIDSVNKELKPLGHTVQKKEREYKEALEAFNEKNREKVQLITRLMEELEGLADP
MRKEVAMVRKKIDSVNKELKPLGHTVQKKEREYKEALEAFNEKNREKVQLITRLMEELEGLADP
MRKEVAMVRKKIDSVNKELKPLGHTVQKKEREYKEALEAFNEKNREKVQLITRLMEELEGLADP
MRKEVAMVRKKIDSVNKELKPLGHTVQKKEREYKEALEAFNEKNREKVQLITRLME(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a