Plant Circular RNA Database

Detail information of Os07g0490200_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os07g0490200_circ_g.1
					
						ID in PlantcircBase
						osa_circ_033848
					
						Alias
						Os_ciR2129
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 18205947-18209193  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os07g0490200						
					
						Parent gene annotation
						
							Similar to Ankyrin repeat-rich membrane-spanning protein. (Os07t
0490200-01);Similar to CaM-binding transcription factor. (Os07t0
490200-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0490200_circ_g.2 Os07g0490200_circ_g.3 						
					
						Support reads
						7/3
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0490200-02:3
Os07t0490200-01:4

General Information
CircRNA Name	Os07g0490200_circ_g.1
ID in PlantcircBase	osa_circ_033848
Alias	Os_ciR2129
Organism	Oryza sativa
Position	chr7: 18205947-18209193 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os07g0490200
Parent gene annotation	Similar to Ankyrin repeat-rich membrane-spanning protein. (Os07t 0490200-01);Similar to CaM-binding transcription factor. (Os07t0 490200-02)
Parent gene strand	-
Alternative splicing	Os07g0490200_circ_g.2 Os07g0490200_circ_g.3
Support reads	7/3
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0490200-02:3 Os07t0490200-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTCCTTGATGCTTCAGAGCTCCAAAATGATTTGCATTTACTTGATTGAGGCCATGATTTGTAGC
ATAAGTTTCTGACACCACATTAAGTGCTGGGATAGCcttggcctcctcatgagcaatcttcatc
ctccggtactcctgttgtgccttgtaagaacggaacagggcttgaacgcgaaccacagatctat
tgaacctg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTGGCCTCCTCATGAGCAATCTTCATCCTCCGGTACTCCTGTTGTGCCTTGTAAGAACGGAAC
AGGGCTTGAACGCGAACCACAGATCTATTGAACCTGTCCTCGGCTTGTTGCCGGCCGGCCTGGA
AGAAGTCTTCTTCTGCAGTACTTGCTGGTTCTGCTTCGGCATCCACAGTCATAACTACTGGCAT
TCCAGATGCGATCCCACGAAGGCCTTTTCTCTTCTTTCTCCATCGCAAAATTGCTTTCTCAACA
ATTCCAACAGACCATATTACCTTGCGGTACTGCCTTCTCACTTGATGACCTCGGTACGCAGCCT
GAGCAAAATATTGTAGTCAATACACAATATCCAATACACATGACATGAACAATATAAGAAGGCA
CAGCAACTTCCTTTTTTTTTCTCACCAAAAATAAGAACATTGAAAATTTGAAATATCAAATGAC
ATTAATTTGCCTTCCAAGTTCCAACACATTGAGCTACCACAAGTGCTCTTCAGCACAGTGAGGA
CAGAAGTAACAAATCAAAACATGCAACAAGAAGATGCAGAAGCTTACTTGTATCCTGATAACTT
GTCTTCGCATGTTAATGAAGTTCCTCCTCATCTTCCATGTACGGAAATGACTCTGTATTCGTGC
AGCAGCTCTCATTGCTTTCTTTCTGTTGTAGTTCCGAAATGCATGTTGAATCTTCATAGCAGCA
ACTATCTCAGATGCTTCAATCTCAGGATTAGCCAATTGAATTGCTTTTGTTTGAAGCTTAAGAG
TTCTCTCCCTGAGTGCAGCTTGGATATTACTGGCAGCATCAGCAGCATTGCGATAGGCTGCTAG
AGATTCTTTTAAGCAAAGTTCTTGTTCACTAAGGTGCTCAAACTTCTCGCTTTGTAGTTTTGTT
AGCCTAGTCTTTGATGGTGATTGCTCAGTATCCTTGGACAGTGACATGGCCTCAAAATGTGCAG
TCAATCCTTTCTCAGCAAGATATGCTGCCAAGCCATCGTAACCTTGTCTTGCTGCAAGATCAGC
AGCAGTGAGTCCAGCAGGGGATTCGGGAGTAGGGTCTGTAACTAAACTTGGATTTGCTCCAGCA
GATAAAAGAGTGGCAACCATCCTTTCCCTGGAAAATGAATGTTAAAAAGTTGAGCACAAGAAAG
TCATCAAAAATCTATGACCCGATCTATTCCGACACAAAATGTACCCAAGATTGCCTATTACTAG
TTGTCTCCAGCAAAAATGAACCAAATGAATCTAAGATCACACTATAATAGAAAATACTGCTTAT
GCATTACAAACGTTCCAGATGTAGCAGGTTGTTCATAACAAAATTCGGTTCATGTTGTCTAACA
GCTGCTTATTTGGTTTCTCATTAGTCAGTTTCCAATCAAGCTTGACTTACAAATAAGCTGAACA
CATCACAGCTGCCAGAACTCATGCAGTAAATGGGTTGTTTAATTTTTAATATTATTTCGTCTAT
GTTACACAGCAAAAGAAGGATAGAAATATCAGGACATAGAGGGTACCTCCCGTGGTATGCAGCC
CAGTGTAAAGCAGTCCAACCAGAAGAATCACGGAAATCCAAGGAGAACCCCGACAAAGAAAACA
ATCGAATAGCCCAAGTATAACCTAGGAAAGAACACAGATGGATAGCTCCTTGTCCTAGATCATC
GCGACCAGTAGACTTATGACCTTCCATTACCATTTCAACAAGCCACTCTTGCAACCTATTTCGC
AACACTAGTTCAAGCAAGCTTTCAGTAACAGGAACATATGTGCCTTCTGGGTCACTAAGAATAT
TCCACAAATCCATCCATTCCTTCTCTGGTAATGCTGACATGAGATTGGCAACTTTGGTGCCTTC
TACAAGCAACTTTGGTGCTATCTTTTTCTTGTTTGTGGCAAACAACAAGCGAGCTAGTCTCATC
TGCATCTTAAGATTTGTCCTTTTGTAATCATCCTCAGATGGCGGCAGCCTAGCCTCCAAGGAAC
TACCATGCATAACATGATACGTGAAACTGCAAATCTCACTGATTGGCGTTTTCCCATCCAAAGT
CAAATAAAAATCCACTTTTCCAGGTGTATGTGGTCCAACCATGAAACGGTAAACACCAGTTTGA
ACAATATCTCCGGCAACACATTGCTCACCAAAGACACCAAACATAGCAGACCCAGCCAAATGCT
TGTATTGCTCATAGAAATTCCCAATCACCACGACCTACAATTCAGCAGTCGTCAATACTTTAGT
AATTTGCAGTTTGATATAACATAAATATAAAACATAACAGCTCAGGTGGATTATGCATGCAATT
CTATATAGTACTCCCTCCATCCCAAAATATAAGCATTTTTAGAATAGTAAACATGTTTAACTTT
GACTATCAATAATGAAAAAATAAAAAAGATCAATCATTTAATAATGATGTTACTAGATTTATCA
CTAAACAAACGATCGTACTCCCTCCGTTTCACAATGTAAATCATTCTAGCATTTTCCACATTCA
TATTGATGTTAATGAATCTAGACATATATGTGTGCCTAGATTCATTAACATCTATATGAATGTG
GGCAATGCTAGAATGACTTACATTATGAAACGGAGGAAGTAATATGCTACTCCATTTATTCAAA
ATATTCTTTTTGTAAATATTATTAGTCAAAGTAGCATATGGAGTTATGACAGAAACAACCCAAC
CAAGAGGTACCTTGTAGACAATAAAAACAATATTTTTTTTTGAAGTTAACAAGAATAATAATTT
TGGTAACTGGGAACAGATAATAATGGAATGCAGCTTTCCCATCAAAATTGAACATTTCAAGAAT
GAAACTAAAACTAGACAGCATGGAAGTTTGCTAGATATCAAAAGGACAACCTTGGTAGTCTCTG
TAGAGTAAGCCCATTCTGGGGAGATCTCATTGATTTCTAATAGTCTTTCATTGGTCACTGGACA
GAAGCTCTGTGGAACTGAACTTGGATTATCTCCTAAACCAGGACTGTCATCATCCAAGTACTTC
CACAGTCCAAGACTGTTCTGCCTAGCAGGCACCTCATTAGGAATAGATGTGTTACCATCCATTG
GAGATTTCACCGAAGAACTTATAAATTGATCTGATTGAGAATCTACATCAGACGCCAAAAGAGA
TTGAGTCTGATCTCCTTGATGCTTCAGAGCTCCAAAATGATTTGCATTTACTTGATTGAGGCCA
TGATTTGTAGCATAAGTTTCTGACACCACATTAAGTGCTGGGATAGC
						
					

			
		

Sequences
Splice junction sequence	CTCCTTGATGCTTCAGAGCTCCAAAATGATTTGCATTTACTTGATTGAGGCCATGATTTGTAGC ATAAGTTTCTGACACCACATTAAGTGCTGGGATAGCcttggcctcctcatgagcaatcttcatc ctccggtactcctgttgtgccttgtaagaacggaacagggcttgaacgcgaaccacagatctat tgaacctg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTGGCCTCCTCATGAGCAATCTTCATCCTCCGGTACTCCTGTTGTGCCTTGTAAGAACGGAAC AGGGCTTGAACGCGAACCACAGATCTATTGAACCTGTCCTCGGCTTGTTGCCGGCCGGCCTGGA AGAAGTCTTCTTCTGCAGTACTTGCTGGTTCTGCTTCGGCATCCACAGTCATAACTACTGGCAT TCCAGATGCGATCCCACGAAGGCCTTTTCTCTTCTTTCTCCATCGCAAAATTGCTTTCTCAACA ATTCCAACAGACCATATTACCTTGCGGTACTGCCTTCTCACTTGATGACCTCGGTACGCAGCCT GAGCAAAATATTGTAGTCAATACACAATATCCAATACACATGACATGAACAATATAAGAAGGCA CAGCAACTTCCTTTTTTTTTCTCACCAAAAATAAGAACATTGAAAATTTGAAATATCAAATGAC ATTAATTTGCCTTCCAAGTTCCAACACATTGAGCTACCACAAGTGCTCTTCAGCACAGTGAGGA CAGAAGTAACAAATCAAAACATGCAACAAGAAGATGCAGAAGCTTACTTGTATCCTGATAACTT GTCTTCGCATGTTAATGAAGTTCCTCCTCATCTTCCATGTACGGAAATGACTCTGTATTCGTGC AGCAGCTCTCATTGCTTTCTTTCTGTTGTAGTTCCGAAATGCATGTTGAATCTTCATAGCAGCA ACTATCTCAGATGCTTCAATCTCAGGATTAGCCAATTGAATTGCTTTTGTTTGAAGCTTAAGAG TTCTCTCCCTGAGTGCAGCTTGGATATTACTGGCAGCATCAGCAGCATTGCGATAGGCTGCTAG AGATTCTTTTAAGCAAAGTTCTTGTTCACTAAGGTGCTCAAACTTCTCGCTTTGTAGTTTTGTT AGCCTAGTCTTTGATGGTGATTGCTCAGTATCCTTGGACAGTGACATGGCCTCAAAATGTGCAG TCAATCCTTTCTCAGCAAGATATGCTGCCAAGCCATCGTAACCTTGTCTTGCTGCAAGATCAGC AGCAGTGAGTCCAGCAGGGGATTCGGGAGTAGGGTCTGTAACTAAACTTGGATTTGCTCCAGCA GATAAAAGAGTGGCAACCATCCTTTCCCTGGAAAATGAATGTTAAAAAGTTGAGCACAAGAAAG TCATCAAAAATCTATGACCCGATCTATTCCGACACAAAATGTACCCAAGATTGCCTATTACTAG TTGTCTCCAGCAAAAATGAACCAAATGAATCTAAGATCACACTATAATAGAAAATACTGCTTAT GCATTACAAACGTTCCAGATGTAGCAGGTTGTTCATAACAAAATTCGGTTCATGTTGTCTAACA GCTGCTTATTTGGTTTCTCATTAGTCAGTTTCCAATCAAGCTTGACTTACAAATAAGCTGAACA CATCACAGCTGCCAGAACTCATGCAGTAAATGGGTTGTTTAATTTTTAATATTATTTCGTCTAT GTTACACAGCAAAAGAAGGATAGAAATATCAGGACATAGAGGGTACCTCCCGTGGTATGCAGCC CAGTGTAAAGCAGTCCAACCAGAAGAATCACGGAAATCCAAGGAGAACCCCGACAAAGAAAACA ATCGAATAGCCCAAGTATAACCTAGGAAAGAACACAGATGGATAGCTCCTTGTCCTAGATCATC GCGACCAGTAGACTTATGACCTTCCATTACCATTTCAACAAGCCACTCTTGCAACCTATTTCGC AACACTAGTTCAAGCAAGCTTTCAGTAACAGGAACATATGTGCCTTCTGGGTCACTAAGAATAT TCCACAAATCCATCCATTCCTTCTCTGGTAATGCTGACATGAGATTGGCAACTTTGGTGCCTTC TACAAGCAACTTTGGTGCTATCTTTTTCTTGTTTGTGGCAAACAACAAGCGAGCTAGTCTCATC TGCATCTTAAGATTTGTCCTTTTGTAATCATCCTCAGATGGCGGCAGCCTAGCCTCCAAGGAAC TACCATGCATAACATGATACGTGAAACTGCAAATCTCACTGATTGGCGTTTTCCCATCCAAAGT CAAATAAAAATCCACTTTTCCAGGTGTATGTGGTCCAACCATGAAACGGTAAACACCAGTTTGA ACAATATCTCCGGCAACACATTGCTCACCAAAGACACCAAACATAGCAGACCCAGCCAAATGCT TGTATTGCTCATAGAAATTCCCAATCACCACGACCTACAATTCAGCAGTCGTCAATACTTTAGT AATTTGCAGTTTGATATAACATAAATATAAAACATAACAGCTCAGGTGGATTATGCATGCAATT CTATATAGTACTCCCTCCATCCCAAAATATAAGCATTTTTAGAATAGTAAACATGTTTAACTTT GACTATCAATAATGAAAAAATAAAAAAGATCAATCATTTAATAATGATGTTACTAGATTTATCA CTAAACAAACGATCGTACTCCCTCCGTTTCACAATGTAAATCATTCTAGCATTTTCCACATTCA TATTGATGTTAATGAATCTAGACATATATGTGTGCCTAGATTCATTAACATCTATATGAATGTG GGCAATGCTAGAATGACTTACATTATGAAACGGAGGAAGTAATATGCTACTCCATTTATTCAAA ATATTCTTTTTGTAAATATTATTAGTCAAAGTAGCATATGGAGTTATGACAGAAACAACCCAAC CAAGAGGTACCTTGTAGACAATAAAAACAATATTTTTTTTTGAAGTTAACAAGAATAATAATTT TGGTAACTGGGAACAGATAATAATGGAATGCAGCTTTCCCATCAAAATTGAACATTTCAAGAAT GAAACTAAAACTAGACAGCATGGAAGTTTGCTAGATATCAAAAGGACAACCTTGGTAGTCTCTG TAGAGTAAGCCCATTCTGGGGAGATCTCATTGATTTCTAATAGTCTTTCATTGGTCACTGGACA GAAGCTCTGTGGAACTGAACTTGGATTATCTCCTAAACCAGGACTGTCATCATCCAAGTACTTC CACAGTCCAAGACTGTTCTGCCTAGCAGGCACCTCATTAGGAATAGATGTGTTACCATCCATTG GAGATTTCACCGAAGAACTTATAAATTGATCTGATTGAGAATCTACATCAGACGCCAAAAGAGA TTGAGTCTGATCTCCTTGATGCTTCAGAGCTCCAAAATGATTTGCATTTACTTGATTGAGGCCA TGATTTGTAGCATAAGTTTCTGACACCACATTAAGTGCTGGGATAGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_017080 						
					
						PMCS
						0.141133023

Conservation Information
Conserved circRNAs	osi_circ_017080
PMCS	0.141133023

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							18209018-18205949(-)
18205962-18209132(-)
						
					

						Potential amino acid sequence
						
							MDGNTSIPNEVPARQNSLGLWKYLDDDSPGLGDNPSSVPQSFCPVTNERLLEINEISPEWAYST
ETTKVVVIGNFYEQYKHLAGSAMFGVFGEQCVAGDIVQTGVYRFMVGPHTPGKVDFYLTLDGKT
PISEICSFTYHVMHGSSLEARLPPSEDDYKRTNLKMQMRLARLLFATNKKKIAPKLLVEGTKVA
NLMSALPEKEWMDLWNILSDPEGTYVPVTESLLELVLRNRLQEWLVEMVMEGHKSTGRDDLGQG
AIHLCSFLGYTWAIRLFSLSGFSLDFRDSSGWTALHWAAYHGRERMVATLLSAGANPSLVTDPT
PESPAGLTAADLAARQGYDGLAAYLAEKGLTAHFEAMSLSKDTEQSPSKTRLTKLQSEKFEHLS
EQELCLKESLAAYRNAADAASNIQAALRERTLKLQTKAIQLANPEIEASEIVAAMKIQHAFRNY
NRKKAMRAAARIQSHFRTWKMRRNFINMRRQVIRIQAAYRGHQVRRQYRKVIWSVGIVEKAILR
WRKKRKGLRGIASGMPVVMTVDAEAEPASTAEEDFFQAGRQQAEDRFNRSVVRVQALFRSYKAQ
QEYRRMKIAHEEAKAIPALNVVSETYATNHGLNQVNANHFGALKHQGDQTQSLLASDVDSQSDQ
FISSSVKSPMDGNTSIPNEVPARQNSLGLWKYLDDDSPGLGDNPSSVPQSFCPVTNERLLEINE
ISPEWAYSTETTKVVVIGNFYEQYKHLAGSAMFGVFGEQCVAGDIVQTGVYRFMVGPHTPGKVD
FYLTLDGKTPISEICSFTYHVMHGSSLEARLPPSEDDYKRTNLKMQMRLARLLFATNKKKIAPK
LLVEGTKVANLMSALPEKEWMDLWNILSDPEGTYVPVTESLLELVLRNRLQEWLVEMVMEGHKS
TGRDDLGQGAIHLCSFLGYTWAIRLFSLSGFSLDFRDSSGWTALHWAAYHGRERMVATLLSAGA
NPSLVTDPTPESPAGLTAADLAARQGYDGLAAYLAEKGLTAHFEAMSLSKDTEQSPSKTRLTKL
QSEKFEHLSEQELCLKESLAAYRNAADAASNIQAALRERTLKLQTKAIQLANPEIEASEIVAAM
KIQHAFRNYNRKKAMRAAARIQSHFRTWKMRRNFINMRRQVIRIQAAYRGHQVRRQYRKVIWSV
GIVEKAILRWRKKRKGLRGIASGMPVVMTVDAEAEPASTAEEDFFQAGRQQAEDRFNRSVVRVQ
ALFRSYKAQQEYRRMKIAHEEAKAIPALNVVSETYATNHGLNQVNANHFGALKHQGDQTQSLLA
SDVDSQSDQFISSSVKSPMDGNTSIPNEVPARQNSLGLWKYLDDDSPGLGDNPSSVPQSFCPVT
NERLLEINEISPEWAYSTETTKVVVIGNFYEQYKHLAGSAMFGVFGEQCVAGDIVQTGVYRFMV
GPHTPGKVDFYLTLDGKTPISEICSFTYHVMHGSSLEARLPPSEDDYKRTNLKMQMRLARLLFA
TNKKKIAPKLLVEGTKVANLMSALPEKEWMDLWNILSDPEGTYVPVTESLLELVLRNRLQEWLV
EMVMEGHKSTGRDDLGQGAIHLCSFLGYTWAIRLFSLSGFSLDFRDSSGWTALHWAAYHGRERM
VATLLSAGANPSLVTDPTPESPAGLTAADLAARQGYDGLAAYLAEKGLTAHFEAMSLSKDTEQS
PSKTRLTKLQSEKFEHLSEQELCLKESLAAYRNAADAASNIQAALRERTLKLQTKAIQLANPEI
EASEIVAAMKIQHAFRNYNRKKAMRAAARIQSHFRTWKMRRNFINMRRQVIRIQAAYRGHQVRR
QYRKVIWSVGIVEKAILRWRKKRKGLRGIASGMPVVMTVDAEAEPASTAEEDFFQAGRQQAEDR
FNRSVVRVQALFRSYKAQQEYRRMKIAHEEAKAIPALNVVSETYATNHGLNQVNANHFGALKHQ
GDQTQSLLASDVDSQSDQFISSSVKSPMDGNTSIPNEVPARQNSLGLWKYLDDDSPGLGDNPSS
VPQSFCPVTNERLLEINEISPEWAYSTETTKVVVIGNFYEQYKHLAGSAMFGVFGEQCVAGDIV
QTGVYRFMVGPHTPGKVDFYLTLDGKTPISEICSFTYHVMHGSSLEARLPPSEDDYKRTNLKMQ
MRLARLLFATNKKKIAPKLLVEGTKVANLMSALPEKEWMDLWNILSDPEGTYVPVTESLLELVL
RNRLQEWLVEMVMEGHKSTGRDDLGQGAIHLCSFLGYTWAIRLFSLSGFSLDFRDSSGWTALHW
AAYHGRERMVATLLSAGANPSLVTDPTPESPAGLTAADLAARQGYDGLAAYLAEKGLTAHFEAM
SLSKDTEQSPSKTRLTKLQSEKFEHLSEQELCLKESLAAYRNAADAASNIQAALRERTLKLQTK
AIQLANPEIEASEIVAAMKIQHAFRNYNRKKAMRAAARIQSHFRTWKMRRNFINMRRQVIRIQA
AYRGHQVRRQYRKVIWSVGIVEKAILRWRKKRKGLRGIASGMPVVMTVDAEAEPASTAEEDFFQ
AGRQQAEDRFNRSVVRVQALFRSYKAQQEYRRMKIAHEEAK(-)
MRRPRLSQHLMWCQKLMLQIMASIK*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	18209018-18205949(-) 18205962-18209132(-)
Potential amino acid sequence	MDGNTSIPNEVPARQNSLGLWKYLDDDSPGLGDNPSSVPQSFCPVTNERLLEINEISPEWAYST ETTKVVVIGNFYEQYKHLAGSAMFGVFGEQCVAGDIVQTGVYRFMVGPHTPGKVDFYLTLDGKT PISEICSFTYHVMHGSSLEARLPPSEDDYKRTNLKMQMRLARLLFATNKKKIAPKLLVEGTKVA NLMSALPEKEWMDLWNILSDPEGTYVPVTESLLELVLRNRLQEWLVEMVMEGHKSTGRDDLGQG AIHLCSFLGYTWAIRLFSLSGFSLDFRDSSGWTALHWAAYHGRERMVATLLSAGANPSLVTDPT PESPAGLTAADLAARQGYDGLAAYLAEKGLTAHFEAMSLSKDTEQSPSKTRLTKLQSEKFEHLS EQELCLKESLAAYRNAADAASNIQAALRERTLKLQTKAIQLANPEIEASEIVAAMKIQHAFRNY NRKKAMRAAARIQSHFRTWKMRRNFINMRRQVIRIQAAYRGHQVRRQYRKVIWSVGIVEKAILR WRKKRKGLRGIASGMPVVMTVDAEAEPASTAEEDFFQAGRQQAEDRFNRSVVRVQALFRSYKAQ QEYRRMKIAHEEAKAIPALNVVSETYATNHGLNQVNANHFGALKHQGDQTQSLLASDVDSQSDQ FISSSVKSPMDGNTSIPNEVPARQNSLGLWKYLDDDSPGLGDNPSSVPQSFCPVTNERLLEINE ISPEWAYSTETTKVVVIGNFYEQYKHLAGSAMFGVFGEQCVAGDIVQTGVYRFMVGPHTPGKVD FYLTLDGKTPISEICSFTYHVMHGSSLEARLPPSEDDYKRTNLKMQMRLARLLFATNKKKIAPK LLVEGTKVANLMSALPEKEWMDLWNILSDPEGTYVPVTESLLELVLRNRLQEWLVEMVMEGHKS TGRDDLGQGAIHLCSFLGYTWAIRLFSLSGFSLDFRDSSGWTALHWAAYHGRERMVATLLSAGA NPSLVTDPTPESPAGLTAADLAARQGYDGLAAYLAEKGLTAHFEAMSLSKDTEQSPSKTRLTKL QSEKFEHLSEQELCLKESLAAYRNAADAASNIQAALRERTLKLQTKAIQLANPEIEASEIVAAM KIQHAFRNYNRKKAMRAAARIQSHFRTWKMRRNFINMRRQVIRIQAAYRGHQVRRQYRKVIWSV GIVEKAILRWRKKRKGLRGIASGMPVVMTVDAEAEPASTAEEDFFQAGRQQAEDRFNRSVVRVQ ALFRSYKAQQEYRRMKIAHEEAKAIPALNVVSETYATNHGLNQVNANHFGALKHQGDQTQSLLA SDVDSQSDQFISSSVKSPMDGNTSIPNEVPARQNSLGLWKYLDDDSPGLGDNPSSVPQSFCPVT NERLLEINEISPEWAYSTETTKVVVIGNFYEQYKHLAGSAMFGVFGEQCVAGDIVQTGVYRFMV GPHTPGKVDFYLTLDGKTPISEICSFTYHVMHGSSLEARLPPSEDDYKRTNLKMQMRLARLLFA TNKKKIAPKLLVEGTKVANLMSALPEKEWMDLWNILSDPEGTYVPVTESLLELVLRNRLQEWLV EMVMEGHKSTGRDDLGQGAIHLCSFLGYTWAIRLFSLSGFSLDFRDSSGWTALHWAAYHGRERM VATLLSAGANPSLVTDPTPESPAGLTAADLAARQGYDGLAAYLAEKGLTAHFEAMSLSKDTEQS PSKTRLTKLQSEKFEHLSEQELCLKESLAAYRNAADAASNIQAALRERTLKLQTKAIQLANPEI EASEIVAAMKIQHAFRNYNRKKAMRAAARIQSHFRTWKMRRNFINMRRQVIRIQAAYRGHQVRR QYRKVIWSVGIVEKAILRWRKKRKGLRGIASGMPVVMTVDAEAEPASTAEEDFFQAGRQQAEDR FNRSVVRVQALFRSYKAQQEYRRMKIAHEEAKAIPALNVVSETYATNHGLNQVNANHFGALKHQ GDQTQSLLASDVDSQSDQFISSSVKSPMDGNTSIPNEVPARQNSLGLWKYLDDDSPGLGDNPSS VPQSFCPVTNERLLEINEISPEWAYSTETTKVVVIGNFYEQYKHLAGSAMFGVFGEQCVAGDIV QTGVYRFMVGPHTPGKVDFYLTLDGKTPISEICSFTYHVMHGSSLEARLPPSEDDYKRTNLKMQ MRLARLLFATNKKKIAPKLLVEGTKVANLMSALPEKEWMDLWNILSDPEGTYVPVTESLLELVL RNRLQEWLVEMVMEGHKSTGRDDLGQGAIHLCSFLGYTWAIRLFSLSGFSLDFRDSSGWTALHW AAYHGRERMVATLLSAGANPSLVTDPTPESPAGLTAADLAARQGYDGLAAYLAEKGLTAHFEAM SLSKDTEQSPSKTRLTKLQSEKFEHLSEQELCLKESLAAYRNAADAASNIQAALRERTLKLQTK AIQLANPEIEASEIVAAMKIQHAFRNYNRKKAMRAAARIQSHFRTWKMRRNFINMRRQVIRIQA AYRGHQVRRQYRKVIWSVGIVEKAILRWRKKRKGLRGIASGMPVVMTVDAEAEPASTAEEDFFQ AGRQQAEDRFNRSVVRVQALFRSYKAQQEYRRMKIAHEEAK(-) MRRPRLSQHLMWCQKLMLQIMASIK*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os07g0490200_circ_g.1

Address

Any questions?

Supported by