Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G23440_circ_g.3 |
ID in PlantcircBase | ath_circ_004059 |
Alias | Chr1:8323450|8324050 |
Organism | Arabidpsis thaliana |
Position | chr1: 8323450-8324050 JBrowse» |
Reference genome | TAIR10.38 |
Type | ui-circRNA |
Identification method | CIRCexplorer; CIRI |
Parent gene | AT1G23440 |
Parent gene annotation |
Peptidase C15, pyroglutamyl peptidase I-like protein |
Parent gene strand | + |
Alternative splicing | AT1G23440_circ_g.2 AT1G23440_circ_g.4 AT1G23440_circ_g.5 |
Support reads | 16 |
Tissues | seedling |
Exon boundary | No-No |
Splicing signals | GT-TA |
Number of exons covered | AT1G23440.1:3 AT1G23440.3:3 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.14535241 |
Functional Information | |
---|---|
Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to methyl jasmonate |
Other Information | |
---|---|
References | Zhang et al., 2020 |