Detail information of BGIOSGA032620_circ_g.4


General Information
CircRNA Name BGIOSGA032620_circ_g.4
ID in PlantcircBase osi_circ_008829
Alias Chr10:6393397_6393557(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 4890890-4891050  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA032620
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA032620-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTAATCTTCAGTGTTTCTTCATTTGTATGTCATGCCAATTAGCTGCAGTAGTCCTCTTGTAGT
TAATCCCCACTTGTTTggtacaacattcttactgtggactatataatgctcatgtggttgtaat
atggttcctgggttatttattttactttatcgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTACAACATTCTTACTGTGGACTATATAATGCTCATGTGGTTGTAATATGGTTCCTGGGTTAT
TTATTTTACTTTATCGTTGTAATCTTCAGTGTTTCTTCATTTGTATGTCATGCCAATTAGCTGC
AGTAGTCCTCTTGTAGTTAATCCCCACTTGTTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021