Plant Circular RNA Database

Detail information of Os02g0305600_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0305600_circ_g.1
					
						ID in PlantcircBase
						osa_circ_014382
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 11936070-11939819  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0305600						
					
						Parent gene annotation
						
							Spectrin repeat containing protein. (Os02t0305600-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0305600_circ_g.2 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0305600-01:7

General Information
CircRNA Name	Os02g0305600_circ_g.1
ID in PlantcircBase	osa_circ_014382
Alias	NA
Organism	Oryza sativa
Position	chr2: 11936070-11939819 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0305600
Parent gene annotation	Spectrin repeat containing protein. (Os02t0305600-01)
Parent gene strand	-
Alternative splicing	Os02g0305600_circ_g.2
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0305600-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATCTCAATATCATGTTCCATAGTTCCAATAAGATTGCTGTTCTCTTCCAAATTGTTTGCTTTAC
TCTTCAAAGTTTTTGTGTTTTCCTCCAACAAAGATTcttatgatgaaaattttgagccaataac
atgaaaatcttgagttgtttataaggtgcagaaatacatgatcgggagatggatccacccaaga
agaagaca

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTATGATGAAAATTTTGAGCCAATAACATGAAAATCTTGAGTTGTTTATAAGGTGCAGAAATA
CATGATCGGGAGATGGATCCACCCAAGAAGAAGACATTAGGCTTATCAACATCGCGAATATGCT
GGCCACATATTGCCTTACAGAACCGTGATACCTGTAAAAAGTTGGAACATATGTCAGGAGCAAT
GACACAAAATCATTATCCATCAAGAAAATTAGGTACCGCTAGCTTACCAATGCTTCTACATCAG
TAATACAAAGAACTTTTATGGAAGCATGAACTAAGAAAACTTCAAGGACTTCGAGTGCTTAGCA
CAATATTTTCATAGATACCATCCAACCATTTCAATATGTTATATATATCACTTATCAGTATATT
TTGCATGCTTAATGCAGCTAGGTGAGAACATGGTTTGAATTGCATACTTACAAATATTAATAAT
GCATATTGCCTAATAAATAAGAGGTGAACACATATATGGGTTCACCAACATGGAAACATAATCA
TGTAGGCACCTCATGGTAGGGTCTGTTCATTGCTTGTATGAAACTCCTGCCATGTTTATATGTA
TGAGAAAAGCAGGACTTTGTGTATGATACCCCCATAAGAAAAGTGCCATGAAGATTCCTGAAAT
ACTGCAGATAATAAAACCATCAACAAAGAACTCTTGGAAATCAGAAAGGGATAAAGATTCCAGT
TTGCACATCATTTACACAACAGGTGATTAATGATGTGTAAATTAACTGTGGTACTGAATGACTG
TAGCTCAATTTGCATAATGATTCTAAGTGCCTAAATAAACTTAGGAATTTAATCCCATTGGCTT
ATAAATCATATAAGCCAAAAATCTGACTTAGAAAACTAAGCCAATAAGCCTAAGTAGCCCTTAG
TATGGCAGTATAACGAATTTTAACATAAATAAGTGAATGTAGTCGTATTTTAAAAATGTAAATA
ATCAGAGTCTCAGATGAGCGTGTTTAATTAAGCTGTGAAGAACAAATTTCTGGAAGGTTTTGAT
AATGCGATACAAGACCAATTCACATCAAAATATTGCAATAAACTTGTAATATTTAGGAAAAGAA
ACATGCAAAATATATACATTGTATTTGGACCGCAAGATGCAGAAATTATATAATTCACAAGTAT
ATACTGAACGCGAACATATTAATATATATAAACTGTCAATATACCTTAAGGACTAAATCTTTTC
CAGGCCATTTATAAGCAGTCTCGGATAACCTGCTTCTTTGATGAACTTTTGATGTCATCATCTG
CATTCATTTCACTTGATGAATAAACTAGTGAACTACTTCTGCATAATTTATAGCAGCACAAATA
TATGGTAAATTACCTTCGTCAACACAAATGCCTGTTCAAGTTGCCGAATTTGGATCCATTGTTC
TGCAATTACACCTTCCATCTGATTCAAAAATTGTGAAACTAACAGTTGTTAAGCTTTTGTGAGA
TAGGTATAAAATAAATCTAGTAGCAGTGTAGCACCAATGAACATTAAGGTCAATCATAACGACG
AATGGCTGCTTTATAAGAATGTTCAGCACTTCTTATGTGTAAGGGTAGCTCTTTGAAAACTAAT
TCTAGATAGCTCAACTGAACCACATAGTTTTTGCTCTTCATTGTTAAGACTTAAAACAAGCTAC
AGAAGATGATTTATATATTTTTTTACAAATATCTTTATTACACCATAGCCTCTTGATAAGCCAC
AAATGAGCACTTTGAACTTTACAAAAATAAGCATTAAACATGTTATTTTCCTCTGTCGAAATAA
TTAATACAGGTGACATGAGTAATGAGTCAAAGAAAAAAAAATTAAAACAGTAGCATTCAAATCC
TACAGAGCATGATTCTGTTTATCTGATGACGAAGAAGGATAAAATAACTTAACAAATTTCCGAC
CTTGTCTGAAGGAAAGTAGATATTACTCTATTAAAGATTCAACTGATCAGTTACATAATACCTT
TTTGACTTCTGAACTCAGAGATTCAACCCTTTTCTCAGCACCATTTGCTAGGGATTCTATTGAG
TCAGCATTCTCATTCATCTTTCTGACCACTCTCCAGAGGAGCTGCACCTGCACAGGAACACTGT
CAGGAGTCACATGATGAATTTTCCAATTGAAGTCTGATCTCATCATGTTCAAAATTTTGGTGGA
GTTTTGTTTGCAACTTCTGCTAATTTGCACTTGTGGAATTTAGAAAATTCTAAAAAATATATAT
ATGCTGACAAGTAATTTATACAAAATATGATATTATGTGTGTGATACAACAAAGACATAATTTT
CCAATCTTCTACAAGTTTTTGCTCAAATAGATTAGTGTGGCATGATCTACATTTACATTTTTTT
CAGAAGTTTCTAAATTACACAAAAATTAATTTGCAAATGTCCCTGGGACTAGCTGCAACTTCCT
CATAATATTTTACTAATACTAAAACATTATACTGAAAAATATATGTAGCTTTAGCCAGCAGAAT
ATAGAAACAAGTATATATATGTAATATATCATTTCAAAGATATGATTATATAATACACCCAACA
AAAGAGGGAAACCCAATTATGGCATGTTATATCATGGATAATAATTAATAAATTATTCTAAAGA
TAAAGCGAGAGGTACCTCATCTTCCAAAGCTTTCACATTGCTTTCTGGGTAGGATTTGCTTTGA
GATTTCTACATCCAGAGAGTGTAAATATTAGCATATGCGAGGAAAGAAATTATATGTACATCAG
CAGTTGGACAAAATTTCTAGAAAGATGACAAATAGTTGAATACATCCTACTGCAGACATTTTCA
CAATAGGAGACATAAAATCATCAGAGTAAATGCTGAATAAGTCAGTTGGATGGGTCGTGCAGTG
GTGGTTAAGGTCAAACATACACATTAAGTTTTAAGCAATCCCCACTAACATGTCATCTCACTAA
GCCATTGAATTTCAAATATTGATAGAGAACATAGAAACTGAGATCTTTTAATTGTAAAAAAGAT
TCATAAAAAATAGTATATGAAGAAAATTATCCACTCATCTACAGATCTACTATTGCAGTGCTCA
TCTTATCTGCTCCCCAAGTCCCCACTAATATAGCCATAGATATTTGTTTCGGTAAGAATAATAT
GACCAGCTAATAAACGAAGTTATACGAGAACGATACTGTACACTCCTTTTTCAAAAAATGTAAT
GTGTGCATGTAGATTTTAATTGATATTCTACTTCCTTTGCCCCTATTTATCACATCTTCTCTTA
GCTGCATTATGATTTAATACTCATACCAATTATTTTCTCTCATATTTCCTTTGTACTTAAGTAT
GGAAGACATGATTATTTCCTCTTCACTTTTTTCTGGTTTCATACCCTTCTTCATCTTTGTTCCC
ATCCAAAGTAAGTCTTATATTTTGAAGAGGAGGAAGTACATAGTTAGCAATGATACATCCACAC
CATTATTCACTTTATTAGTCCTAAAGTGGTTTTCTACAAAAAAGAATTCCATGATTTTTGAAGA
AGAGATTATGTACAGTGCAAGTGATGTTTATTCATCTACAGCGAGATGGCTAACTTGTTACAGA
GCAACATAACACAAGCATTCACTGATATAACCGCATACCTTGGTACTCTCATATTTGTTCATTA
AAATCTCAATATCATGTTCCATAGTTCCAATAAGATTGCTGTTCTCTTCCAAATTGTTTGCTTT
ACTCTTCAAAGTTTTTGTGTTTTCCTCCAACAAAGATT
						
					

			
		

Sequences
Splice junction sequence	ATCTCAATATCATGTTCCATAGTTCCAATAAGATTGCTGTTCTCTTCCAAATTGTTTGCTTTAC TCTTCAAAGTTTTTGTGTTTTCCTCCAACAAAGATTcttatgatgaaaattttgagccaataac atgaaaatcttgagttgtttataaggtgcagaaatacatgatcgggagatggatccacccaaga agaagaca
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTATGATGAAAATTTTGAGCCAATAACATGAAAATCTTGAGTTGTTTATAAGGTGCAGAAATA CATGATCGGGAGATGGATCCACCCAAGAAGAAGACATTAGGCTTATCAACATCGCGAATATGCT GGCCACATATTGCCTTACAGAACCGTGATACCTGTAAAAAGTTGGAACATATGTCAGGAGCAAT GACACAAAATCATTATCCATCAAGAAAATTAGGTACCGCTAGCTTACCAATGCTTCTACATCAG TAATACAAAGAACTTTTATGGAAGCATGAACTAAGAAAACTTCAAGGACTTCGAGTGCTTAGCA CAATATTTTCATAGATACCATCCAACCATTTCAATATGTTATATATATCACTTATCAGTATATT TTGCATGCTTAATGCAGCTAGGTGAGAACATGGTTTGAATTGCATACTTACAAATATTAATAAT GCATATTGCCTAATAAATAAGAGGTGAACACATATATGGGTTCACCAACATGGAAACATAATCA TGTAGGCACCTCATGGTAGGGTCTGTTCATTGCTTGTATGAAACTCCTGCCATGTTTATATGTA TGAGAAAAGCAGGACTTTGTGTATGATACCCCCATAAGAAAAGTGCCATGAAGATTCCTGAAAT ACTGCAGATAATAAAACCATCAACAAAGAACTCTTGGAAATCAGAAAGGGATAAAGATTCCAGT TTGCACATCATTTACACAACAGGTGATTAATGATGTGTAAATTAACTGTGGTACTGAATGACTG TAGCTCAATTTGCATAATGATTCTAAGTGCCTAAATAAACTTAGGAATTTAATCCCATTGGCTT ATAAATCATATAAGCCAAAAATCTGACTTAGAAAACTAAGCCAATAAGCCTAAGTAGCCCTTAG TATGGCAGTATAACGAATTTTAACATAAATAAGTGAATGTAGTCGTATTTTAAAAATGTAAATA ATCAGAGTCTCAGATGAGCGTGTTTAATTAAGCTGTGAAGAACAAATTTCTGGAAGGTTTTGAT AATGCGATACAAGACCAATTCACATCAAAATATTGCAATAAACTTGTAATATTTAGGAAAAGAA ACATGCAAAATATATACATTGTATTTGGACCGCAAGATGCAGAAATTATATAATTCACAAGTAT ATACTGAACGCGAACATATTAATATATATAAACTGTCAATATACCTTAAGGACTAAATCTTTTC CAGGCCATTTATAAGCAGTCTCGGATAACCTGCTTCTTTGATGAACTTTTGATGTCATCATCTG CATTCATTTCACTTGATGAATAAACTAGTGAACTACTTCTGCATAATTTATAGCAGCACAAATA TATGGTAAATTACCTTCGTCAACACAAATGCCTGTTCAAGTTGCCGAATTTGGATCCATTGTTC TGCAATTACACCTTCCATCTGATTCAAAAATTGTGAAACTAACAGTTGTTAAGCTTTTGTGAGA TAGGTATAAAATAAATCTAGTAGCAGTGTAGCACCAATGAACATTAAGGTCAATCATAACGACG AATGGCTGCTTTATAAGAATGTTCAGCACTTCTTATGTGTAAGGGTAGCTCTTTGAAAACTAAT TCTAGATAGCTCAACTGAACCACATAGTTTTTGCTCTTCATTGTTAAGACTTAAAACAAGCTAC AGAAGATGATTTATATATTTTTTTACAAATATCTTTATTACACCATAGCCTCTTGATAAGCCAC AAATGAGCACTTTGAACTTTACAAAAATAAGCATTAAACATGTTATTTTCCTCTGTCGAAATAA TTAATACAGGTGACATGAGTAATGAGTCAAAGAAAAAAAAATTAAAACAGTAGCATTCAAATCC TACAGAGCATGATTCTGTTTATCTGATGACGAAGAAGGATAAAATAACTTAACAAATTTCCGAC CTTGTCTGAAGGAAAGTAGATATTACTCTATTAAAGATTCAACTGATCAGTTACATAATACCTT TTTGACTTCTGAACTCAGAGATTCAACCCTTTTCTCAGCACCATTTGCTAGGGATTCTATTGAG TCAGCATTCTCATTCATCTTTCTGACCACTCTCCAGAGGAGCTGCACCTGCACAGGAACACTGT CAGGAGTCACATGATGAATTTTCCAATTGAAGTCTGATCTCATCATGTTCAAAATTTTGGTGGA GTTTTGTTTGCAACTTCTGCTAATTTGCACTTGTGGAATTTAGAAAATTCTAAAAAATATATAT ATGCTGACAAGTAATTTATACAAAATATGATATTATGTGTGTGATACAACAAAGACATAATTTT CCAATCTTCTACAAGTTTTTGCTCAAATAGATTAGTGTGGCATGATCTACATTTACATTTTTTT CAGAAGTTTCTAAATTACACAAAAATTAATTTGCAAATGTCCCTGGGACTAGCTGCAACTTCCT CATAATATTTTACTAATACTAAAACATTATACTGAAAAATATATGTAGCTTTAGCCAGCAGAAT ATAGAAACAAGTATATATATGTAATATATCATTTCAAAGATATGATTATATAATACACCCAACA AAAGAGGGAAACCCAATTATGGCATGTTATATCATGGATAATAATTAATAAATTATTCTAAAGA TAAAGCGAGAGGTACCTCATCTTCCAAAGCTTTCACATTGCTTTCTGGGTAGGATTTGCTTTGA GATTTCTACATCCAGAGAGTGTAAATATTAGCATATGCGAGGAAAGAAATTATATGTACATCAG CAGTTGGACAAAATTTCTAGAAAGATGACAAATAGTTGAATACATCCTACTGCAGACATTTTCA CAATAGGAGACATAAAATCATCAGAGTAAATGCTGAATAAGTCAGTTGGATGGGTCGTGCAGTG GTGGTTAAGGTCAAACATACACATTAAGTTTTAAGCAATCCCCACTAACATGTCATCTCACTAA GCCATTGAATTTCAAATATTGATAGAGAACATAGAAACTGAGATCTTTTAATTGTAAAAAAGAT TCATAAAAAATAGTATATGAAGAAAATTATCCACTCATCTACAGATCTACTATTGCAGTGCTCA TCTTATCTGCTCCCCAAGTCCCCACTAATATAGCCATAGATATTTGTTTCGGTAAGAATAATAT GACCAGCTAATAAACGAAGTTATACGAGAACGATACTGTACACTCCTTTTTCAAAAAATGTAAT GTGTGCATGTAGATTTTAATTGATATTCTACTTCCTTTGCCCCTATTTATCACATCTTCTCTTA GCTGCATTATGATTTAATACTCATACCAATTATTTTCTCTCATATTTCCTTTGTACTTAAGTAT GGAAGACATGATTATTTCCTCTTCACTTTTTTCTGGTTTCATACCCTTCTTCATCTTTGTTCCC ATCCAAAGTAAGTCTTATATTTTGAAGAGGAGGAAGTACATAGTTAGCAATGATACATCCACAC CATTATTCACTTTATTAGTCCTAAAGTGGTTTTCTACAAAAAAGAATTCCATGATTTTTGAAGA AGAGATTATGTACAGTGCAAGTGATGTTTATTCATCTACAGCGAGATGGCTAACTTGTTACAGA GCAACATAACACAAGCATTCACTGATATAACCGCATACCTTGGTACTCTCATATTTGTTCATTA AAATCTCAATATCATGTTCCATAGTTCCAATAAGATTGCTGTTCTCTTCCAAATTGTTTGCTTT ACTCTTCAAAGTTTTTGTGTTTTCCTCCAACAAAGATT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.094101038

Conservation Information
Conserved circRNAs	NA
PMCS	0.094101038

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							11939732-11936073(+)
11936597-11939782(-)
11939741-11939789(-)
						
						Potential amino acid sequence
						
							MFHSSNKIAVLFQIVCFTLQSFCVFLQQRFL*(+)
MRYHGSVRQYVASIFAMLISLMSSSWVDPSPDHVFLHLINNSRFSCYWLKIFIIRIFVGGKHKN
FEE*(-)
MEHDIEILMNKYESTKKSQSKSYPESNVKALEDEVQLLWRVVRKMNENADSIESLANGAEKRVE
SLSSEVKKMEGVIAEQWIQIRQLEQAFVLTKMMTSKVHQRSRLSETAYKWPGKDLVLKYFRNLH
GTFLMGVSYTKSCFSHTYKHGRSFIQAMNRPYHEVSRFCKAICGQHIRDVDKPNVFFLGGSISR
SCISAPYKQLKIFMLLAQNFHHKNLCWRKTQKL*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	11939732-11936073(+) 11936597-11939782(-) 11939741-11939789(-)
Potential amino acid sequence	MFHSSNKIAVLFQIVCFTLQSFCVFLQQRFL(+) MRYHGSVRQYVASIFAMLISLMSSSWVDPSPDHVFLHLINNSRFSCYWLKIFIIRIFVGGKHKN FEE(-) MEHDIEILMNKYESTKKSQSKSYPESNVKALEDEVQLLWRVVRKMNENADSIESLANGAEKRVE SLSSEVKKMEGVIAEQWIQIRQLEQAFVLTKMMTSKVHQRSRLSETAYKWPGKDLVLKYFRNLH GTFLMGVSYTKSCFSHTYKHGRSFIQAMNRPYHEVSRFCKAICGQHIRDVDKPNVFFLGGSISR SCISAPYKQLKIFMLLAQNFHHKNLCWRKTQKL*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0305600_circ_g.1

Address

Any questions?

Supported by