Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G08260_circ_g.11 |
ID in PlantcircBase | ath_circ_001322 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 2602358-2603263 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT1G08260 |
Parent gene annotation |
DNA polymerase epsilon catalytic subunit A |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 1 |
Tissues | inflorescences |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G08260.1:4 AT1G08260.2:4 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.153779921 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
2602814-2603260(+) |
Potential amino acid sequence |
MKEGIKALDDFPCVRIPFNDDDNSYQPVSWQRPAAKIAMFRCAAAFQWLDRRITQSRYAHVPLG NFGLDWLTFTIDIFLSRALRDQQQVHYVDHPEAAKKIIQRAISEYREENCGPTVAVIECPDFTF MKEGIKALDDFPCVRIPFNDDDNSYQPVSWQRPAAKIAMFRCAAAFQWLDRRITQSRYAHVPLG NFGLDWLTFTIDIFLSRALRDQQQVHYVDHPEAAKKIIQRAISEYREENCGPTVAVIECPDFTF MKEGIKALDDFPCVRIPFNDDDNSYQPVSWQRPAAKIAMFRCAAAFQWLDRRITQSRYAHVPLG NFGLDWLTFTIDIFLSRALRDQQQVHYVDHPEAAKKIIQRAISEYREENCGPTVAVIECPDFTF MKEGIKALDDFPCVRIPFNDDDNSYQPVSWQRPAAKIAMFRCAAAFQWLDRRITQSRYAHVPLG NFGLDWLTFTIDIFLSRALRDQQQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |