Detail information of BGIOSGA012739_circ_g.1


General Information
CircRNA Name BGIOSGA012739_circ_g.1
ID in PlantcircBase osi_circ_013080
Alias Chr03:15610091_15612804(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 16671638-16674352  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA012739
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA012739-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCAGTTGCGAAGGAAGCATTGGAAGGGCATTGCATCTACGATGGTGGCTACTGTAAGCTCCAC
CTGTCATATTCTCGTCATACTGATCTCAATGTAAAGgtattcaaacagacaagaaatagttaac
aacaagagccctggagagactgctggaaatgtgttgctagttactatagaaggtgttcaagcaa
acgatgtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATTCAAACAGACAAGAAATAGTTAACAACAAGAGCCCTGGAGAGACTGCTGGAAATGTGTTG
CTAGTTACTATAGAAGGTGTTCAAGCAAACGATGTCACCATCGATGTGATCCATCTGGTGAGTT
CTAAATTTTAGTTTCTTTTCCAACATGAAAGTATTTCAATGGGTGAATTAGTAAGATCATGAAA
AATTTAAGTGTGACTGTTGCTATATCGGTTGCCATTGACTGAAGGGATCCAAGGGAGTCTACCT
GACCTGATCCTTGTAAATCAAAGATTTTACATAGCTCTTCATCTCGTAGTAACGTATTCTGCAT
GAATCAGCAGGCCCATGTTAACACGGAGAAAATGTCGTTATCAACATCTGCAATTGGAGAGATA
TCATGTTTGTTTTGCTGCCTCTGTCTTCTAACTATTACATCTGAAGTTTTTATGAACTCTTGGG
GATGCCATTTTCTAATTATCTTTCATCATCACGCTTTTCCACGGTGTAGGGCACCTCCCTGTTT
ATCCAAGTTATTGATGAAAGGTTAAATTCCCAACCTTTAGAAAATTAGTACATCTATGGTGCTT
CTTTTGTGATCATTTTGTGGTTCTTTTATCCATCTATTAGCAATACAATATAGTTCCATTTGTC
CCTGGTTCATCTGTCTAAGATCTTCTGTCCTCTTTGTCTTTTTGGTGGACAAAAGGATAACCTT
TAAGAGTTTCCTGCCAGATAGAATATTTAATAATTGATTTTATGTACTACAACTACAAGATTTT
TATATGTGCTGCCAGTTCCTGGATTAATTTTCTCTTTTACTCCTATATATGACCCTTCTATTAT
ATTTCAGGTTTTCTCAGCTTTTGGATTTGTTCACAAAATAGCCACTTTTGAGAAGGCTGCAGGT
TTTCAGGTTACTTGAAATTTCAAATTCTGTTAATATACTTGATTGTTTACAAAGGCGATCTTCC
CACCTTATTTTCTTCCCCCGCAGGCACTGATTCAATACACAGATGCAGCCACAGCTTCTGCAGC
AAGAGAAGCCTTGGATGGAAGAAGCATCCCAAGGTGACATCTTTGTTCTCTGTACATTGCATCT
TTTAATATTGTTCACACTTTGCTCCTCCTATAAACTGAATTCCTCTGAGACTTTAATTTAATGT
AGGTACTTGCTTCCAGAGCATGTAACATCTTGTTGTTTGCGTATTTCGTTCTCTGCGCATAAGG
ATCTGAATATCAAGTTCCAGTCACATCGCAGCAGGTATCACTTATATCTTTTTTGCCTTGAGTT
AATTTACAAAGATCAAATTTCGCGGTTGTTAAGATGGATCTCTATATGTCTAGGAGGATTGTAA
TATCAACATACTACCTGGTACCATATTTTAATGTCTACATTAAGATTTATGCCTAGGCATTGCA
AGATCATACCTCATATTTTCCCTGCAAATTCAGAAATACGTGTTCTGCCACATCATGGGCATTT
TACCTTTATTCATCTTTCCTGTTCATCCTGCTGCCTCCTTATATACTGACACATGATTACTTTG
AAAACCTGGTAAAATAGACTATCAACCACTGGATTCCAGATTTGAATTTGCAACCTAATTGTTG
GCTAAAACAAAGTAGCTTTTTTCATGGGTTAAGGGCATATTCATCCATAGTAGCACTTGGCTTC
CATTTTTTTAGCCTCTTGCTTTTTGTATGGAACTTCCATATTTGTATGAGTATATTACTGCAAA
ATCTTTATTTGTCAGTGGATTCGTCTTCTCCATCTTTGTTCCTTATCTTATTTGCCTTGTGTTA
TTATAGATCAAAATGCTTCTTACTATGTATCTTGTTAAACATGTTTTCTTTTTTATTTTGCAGG
GATTACACCAACCCTTACCTTCCGGTTAATTCATCTGCTATAGATACGTTACAGGTACTACTAT
TGGATATCACCAACATTTGAATAATTTAATTGTCTTTTTTTTTTTCCATTTATATGAACCTGCC
TTTCATATAAACTGCCTTTTGATGTTCCTTCACAGCCTGCTGTTGGTGCCGATGGAAGGAAAGT
GGAAGCTGAAGGCAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGAT
GTTCTCCATACTGTAAGTTAAATTGGAAAGCACTTATTCAAAGATTTTGTTGTTTTGTAGTTAC
TTCATGCTGACTAAGATTAATCAATTCCAGGTGTTCTCTGCATTTGGTACAGTCCAGAAAATAG
CTATTTTTGAGAAGAACGGTGGAACACAAGCTTTGATTCAGTACCCTGGTATGAACCTTGGAAC
ATATCATCTTAGTAGAATTACAGAATAATTATGTTTTGTGTTGAATTAGTGCTTTCATTTTCAA
CATTTGACCTAGCAGACCACACCTCCAACAAAGCTTGATATTGTTATTTCGTTTACAGAAATTA
TTTTCCTATTTTTGTAATTGAAGTGAATGTGTAGAAGTTGTGCAGAACTAACCAATGTAAACAT
GCTTTCCTTTACATCGTAACAAACATGTGCTTGTTCTGTTTATGATTTCATGTGCTTTAAATTC
AGACATTTTTTCATGATCTGACCTCATTACATTACCATTCAGATGTAACTACAGCTTCAGTTGC
GAAGGAAGCATTGGAAGGGCATTGCATCTACGATGGTGGCTACTGTAAGCTCCACCTGTCATAT
TCTCGTCATACTGATCTCAATGTAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021