Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d010842_circ_g.1 |
ID in PlantcircBase | zma_circ_009693 |
Alias | Zm08circ00048, zma_circ_0002775 |
Organism | Zea mays |
Position | chr8: 129923016-129923475 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d010842 |
Parent gene annotation |
Pentatricopeptide repeat-containing protein |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d010842_T011:2 Zm00001d010842_T018:2 Zm00001d010842_T002:2 Zm00001d010842_T013:2 Zm00001d010842_T008:2 Zm00001d010842_T009:2 Zm00001d010842_T012:2 Zm00001d010842_T006:1 Zm00001d010842_T001:2 Zm00001d010842_T020:2 Zm00001d010842_T021:1 Zm00001d010842_T017:2 Zm00001d010842_T007:2 Zm00001d010842_T019:2 Zm00001d010842_T016:2 Zm00001d010842_T004:2 Zm00001d010842_T003:2 Zm00001d010842_T014:2 Zm00001d010842_T022:2 Zm00001d010842_T010:2 Zm00001d010842_T015:2 Zm00001d010842_T005:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.200412218 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
129923477-129923018(-) 129923022-129923414(-) |
Potential amino acid sequence |
MCSEVHVEGDASVGQKGCKDIRRYKCEFCTVVRSKKCLIQAHMVAHHKDELDKSEIYNSDGEKI VHEQEHRCQECGRCFQKPAHLKQHMQSHSHEMCSEVHVEGDASVGQKGCKDIRRYKCEFCTVVR SKKCLIQAHMVAHHKDELDKSEIYNSDGEKIVHEQEHRCQECGRCFQKPAHLKQHMQSHSHEMC SEVHVEGDASVGQKGCKDIRRYKCEFCTVVRSKKCLIQAHMVAHHKDELDKSEIYNSDGEKIVH EQEHRCQECGRCFQKPAHLKQHMQSHSHEMCSEVHVEGDASVGQKGCKDIRRYKCEFCTVVRSK KCLIQAHMVAHHKDELDKSEIYNSDGEKIVHEQEHRCQECGRCFQKPAHLKQHMQSHSHE(-) MRCVLKFMLREMQVSDRRVARI*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b |