Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d022405_circ_g.3 |
ID in PlantcircBase | zma_circ_002639 |
Alias | circ1650 |
Organism | Zea mays |
Position | chr7: 176874463-176875043 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d022405 |
Parent gene annotation |
Protein CHROMATIN REMODELING 5 |
Parent gene strand | - |
Alternative splicing | Zm00001d022405_circ_g.2 Zm00001d022405_circ_g.4 Zm00001d022405_circ_g.5 |
Support reads | 6 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | CT-AA |
Number of exons covered | Zm00001d022405_T007:3 Zm00001d022405_T013:3 Zm00001d022405_T047:3 Zm00001d022405_T032:3 Zm00001d022405_T058:3 Zm00001d022405_T045:3 Zm00001d022405_T051:3 Zm00001d022405_T041:3 Zm00001d022405_T009:3 Zm00001d022405_T028:3 Zm00001d022405_T055:3 Zm00001d022405_T044:3 Zm00001d022405_T050:3 Zm00001d022405_T025:3 Zm00001d022405_T049:3 Zm00001d022405_T003:3 Zm00001d022405_T012:3 Zm00001d022405_T042:3 Zm00001d022405_T006:3 Zm00001d022405_T057:3 Zm00001d022405_T046:3 Zm00001d022405_T038:3 Zm00001d022405_T005:3 Zm00001d022405_T040:3 Zm00001d022405_T034:3 Zm00001d022405_T022:3 Zm00001d022405_T029:3 Zm00001d022405_T016:3 Zm00001d022405_T048:3 Zm00001d022405_T026:3 Zm00001d022405_T036:3 Zm00001d022405_T008:3 Zm00001d022405_T019:3 Zm00001d022405_T024:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.196786245 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |