Detail information of AT2G22780_circ_g.3


General Information
CircRNA Name AT2G22780_circ_g.3
ID in PlantcircBase ath_circ_014425
Alias 2:9690361-9690733
Organism Arabidpsis thaliana
Position chr2: 9690361-9690733  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G22780
Parent gene annotation Malate dehydrogenase
Parent gene strand -
Alternative splicing AT2G22780_circ_g.1 AT2G22780_circ_g.2 AT2G22780_circ_g.4 AT2G22780_circ_g.5 AT2G22780_circ_g.6 AT2G22780_circ_g.7 AT2G22780_circ_g.8 AT2G22780_circ_g.9
Support reads 1/1/1/1/2
Tissues seedling;root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G22780.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGATTAGTTTATACCTCAACAACTTCAGTGCCACCGTTTTGGATGCGGTCTGTGAGATATTC
AATCTCTTTTTGAGTGAACGAGCAAGGAGGTTTCACatgggatgccacatatgcgcactcaacg
atgtttgcatcacctcgtagacccctgaggcaagcatctgcaaactccactgctgcatatgcct
gtatttta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 210
Transcript exons: 9690361-9690450,9690536-9690571,9690650-9690733
ATGGGATGCCACATATGCGCACTCAACGATGTTTGCATCACCTCGTAGACCCCTGAGGCAAGCA
TCTGCAAACTCCACTGCTGCATATGCCATGGATAGTGTTGCAGAACCTGCTCCAGCTTTAGCCT
CAACAACTTCAGTGCCACCGTTTTGGATGCGGTCTGTGAGATATTCAATCTCTTTTTGAGTGAA
CGAGCAAGGAGGTTTCAC

Genomic sequence ATGGGATGCCACATATGCGCACTCAACGATGTTTGCATCACCTCGTAGACCCCTGAGGCAAGCA
TCTGCAAACTCCACTGCTGCATATGCCTGTATTTTATCATTTAACAGATTGAGATATCAATCAA
ATTCCCAGCTTTGTCATACAACTCCCATGTTACAACAAAAGACCTACCATGGATAGTGTTGCAG
AACCTGCTCCAGCTTTAGCCTGCAAAATGATTTAAACGGTAAATGCACCGCTTAATTCGAAGTT
CAAAACAAAGAAAGCTGAAAGATTAGTTTATACCTCAACAACTTCAGTGCCACCGTTTTGGATG
CGGTCTGTGAGATATTCAATCTCTTTTTGAGTGAACGAGCAAGGAGGTTTCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.252100846
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020