Detail information of AT3G04940_circ_g.1


General Information
CircRNA Name AT3G04940_circ_g.1
ID in PlantcircBase ath_circ_019755
Alias NA
Organism Arabidpsis thaliana
Position chr3: 1366058-1366467  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT3G04940
Parent gene annotation Bifunctional L-3-cyanoalanine synthase/cysteine synthase D1
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G04940.1:2
AT3G04940.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAAGGCGTTCAAGGAATAATCGACAAAGCTGAAGAGATATGTAGCAAAAATCCAGATAGTATC
ATGCTAGAACAGTTCAAAAATCCTTCAAACCCGCAAaattgcttatggtatgattaaagatgca
gaagacaagggattgattactcctgggaaggtagatcagattatatcatacattcgtgtttttt
cgttttcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATTGCTTATGGTATGATTAAAGATGCAGAAGACAAGGGATTGATTACTCCTGGGAAGGTAGAT
CAGATTATATCATACATTCGTGTTTTTTCGTTTTCGCCATTAAAAATCAAACTGATACTTGGAT
CCTGGTGGTTTTACTCAGAGCACACTGATTGAGGCTACCTCTGGTAACACCGGGATTGGTTTAG
CCTTCATCGGTGCAGCTAAAGGTTACAAAGTGGTCCTCACAATGCCCTCATCAATGAGCCTTGA
GAGAAAAATCATTCTTTTAGCATTAGGTGCGGAGGTTCACCTCACAGATCCTAGTAAAGGCGTT
CAAGGAATAATCGACAAAGCTGAAGAGATATGTAGCAAAAATCCAGATAGTATCATGCTAGAAC
AGTTCAAAAATCCTTCAAACCCGCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.175829716
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017