Detail information of BGIOSGA009502_circ_igg.2


General Information
CircRNA Name BGIOSGA009502_circ_igg.2
ID in PlantcircBase osi_circ_005238
Alias 3:39404501|39404879
Organism Oryza sativa ssp. indica
Position chr3: 39404501-39404879  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA009502_circ_igg.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCGTGATAGATGCACAGCGCCGAAACACATTGGGCAAGGTTCACATGATGCATACATTTCACA
GTCTGACAACTCAATTTTTCCAAGCTTTTTGCAAGCaattagtacatccgaaacttctccttag
tgttctcgaagacttgttcagcaatcagggctccattgccatctgcccgccttatctccaagtt
ggccttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATTAGTACATCCGAAACTTCTCCTTAGTGTTCTCGAAGACTTGTTCAGCAATCAGGGCTCCAT
TGCCATCTGCCCGCCTTATCTCCAAGTTGGCCTTCTGGTAGTAAGCAGTTCCCCTCAAAGCATC
AGCAATGAAGTCATCGAATCCAATGGCAATAGCAGCTTCTGCCTTGGCTCCATACACCAGCCTC
TGCATTGCAGCATTGAAAAATATTGTTAATTAAGCAAAAGCTACATTCTTCCAGGTGAACCATA
ATAAGGTAAGGAACTAACCTTAATCCGTGATAGATGCACAGCGCCGAAACACATTGGGCAAGGT
TCACATGATGCATACATTTCACAGTCTGACAACTCAATTTTTCCAAGCTTTTTGCAAGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021