Detail information of BGIOSGA015119_circ_g.1


General Information
CircRNA Name BGIOSGA015119_circ_g.1
ID in PlantcircBase osi_circ_005454
Alias 4:18515598|18516427
Organism Oryza sativa ssp. indica
Position chr4: 18515598-18516427  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015119
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA015119-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTGCTTACCGTAGTCTTTGTGTTTAAACAGTCCAAGACAACCATCACAGCCAACTTTCCACAA
ACGCACCATCTTATCTTTTGATGAGGTCAAGAGATActgcagactgttgacccgatggacagca
gacttcttcccttgcataaacaattctttgtctagttggatgttttcacctaatcaagaaaatg
aactgctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCAGACTGTTGACCCGATGGACAGCAGACTTCTTCCCTTGCATAAACAATTCTTTGTCTAGT
TGGATGTTTTCACCTAATCAAGAAAATGAACTGCTCAGTTAGACGTACGAACACACCAATTGGG
ACAATAGTCATATTACTAACAGAAAGCACGCAGGTAGTGTGCACAATGAGCTCTATGTACCTGA
TTGATCGTAAAAGCGGCATTCTCCAGAAGTAGTGCCAACAATAAAGCCCTGGTTTGAAAAAAAA
ACAAATTAATAATTAACATCTAGTTGTGCAGAATATTTCAAACTACATTTTGATCAGATTCAAA
CCTTTCCATCCGGTTGGTAACTAAGAGCAGTTATGATCTTCCGTGTATCAGCCCAGTCAACTAC
TCTCTTATCCAAAGCATCCCAAACACGAACTTTTCCATCTATTGAACCACTGATGAAGTATCTT
TCATCGATAGGATTGAATTGAACACATGTCACTGTTAACAATTTCAAAGGAATGAAAAAAAAAG
TCAATGCAATAGCCCAAAGTACATATAACATTATAAGACTGTCTTTCATCGCAATAAGGATATA
ATCAACACAGAGCAAATAATTCTTTTTTGAAACCGAGGCGGAACTTTGTTCCAACTTTTATATT
TAGAAGAAGAGAATTTACCCAGTTTATAAGGAAAACTGGGCCCGAAAATCATACAGAGCAAATA
ATTAGTAAAGAACACTATAATAGTATGTTGCTTACCGTAGTCTTTGTGTTTAAACAGTCCAAGA
CAACCATCACAGCCAACTTTCCACAAACGCACCATCTTATCTTTTGATGAGGTCAAGAGATA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 18516402-18515600(-)
Potential amino acid sequence MVRLWKVGCDGCLGLFKHKDYVTCVQFNPIDERYFISGSIDGKVRVWDALDKRVVDWADTRKII
TALSYQPDGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKSAVHRVNSLQYLLTSSKDKMV
RLWKVGCDGCLGLFKHKDYVTCVQFNPIDERYFISGSIDGKVRVWDALDKRVVDWADTRKIITA
LSYQPDGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKSAVHRVNSLQYLLTSSKDKMVRL
WKVGCDGCLGLFKHKDYVTCVQFNPIDERYFISGSIDGKVRVWDALDKRVVDWADTRKIITALS
YQPDGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKSAVHRVNSLQYLLTSSKDKMVRLWK
VGCDGCLGLFKHKDYVTCVQFNPIDERYFISGSIDGKVRVWDALDKRVVDWADTRKIITALSYQ
PDGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKSAVHRVNSLQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021