Detail information of AT5G35980_circ_g.1


General Information
CircRNA Name AT5G35980_circ_g.1
ID in PlantcircBase ath_circ_041199
Alias NA
Organism Arabidpsis thaliana
Position chr5: 14129989-14133015  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT5G35980
Parent gene annotation Dual specificity protein kinase YAK1 homolog
Parent gene strand +
Alternative splicing AT5G35980_circ_g.2 AT5G35980_circ_g.3 AT5G35980_circ_g.4 AT5G35980_circ_g.5 AT5G35980_circ_g.6
Support reads 11
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT5G35980.1:12
AT5G35980.3:12
AT5G35980.2:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAACATCAACTTTTCATGTTTTAAGGCAGCAAAGCACCCTTTCATTACTGGAGAACCTTTTACG
TGCCCATACAACCCTCCGCCAGAAACACCTCGTGTGgtggtggtgagactaactagggacttgg
ttgagacgtacaaaatatgtgacccacagttcaaatatagaggagagttgaatcccaagcggta
cttgacta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGTGGTGAGACTAACTAGGGACTTGGTTGAGACGTACAAAATATGTGACCCACAGTTCAAAT
ATAGAGGAGAGTTGAATCCCAAGCGGTACTTGACTACTCCATCAGTTGGTGTGAACAATGATGG
CTTTGATAATGTCAACTACGATCTAATTCTGGCTGTAAATGATGATTTTTGCAGTTCAGATTCA
CGGCAGAGGTTTGCTATTGTCTTATTTATTTTCAATTTTTATTATACCAATAATGATCCTCCTT
TTGTTGTGCTGTCAGACGCATAAAATTTGAACCACTTTTCTATCCACAATAGACGTCTATTTGA
TTAAGCTAATAAGCTTCACTCGTTCTCTTAGATACATTGTCAAAGATCTTCTTGGCCATGGGAC
TTTTGGTCAGGTTGCTAAATGCTGGGTTCCTGAGACAAACAGCTTTGTTGCTGTAAAAGTAATA
AAAAACCAGCTTGCATACTATCAGCAGGCATTGGTTGAAGTATCTATTTTGACAACGGTATGTA
ATTATTCAATATTTGAATGATCTTTTGTATTCATATTCTTGGTGGTGAAAATCGCTAGTGGGGT
CTGTCTCTTACTTTTCGCTTGGGTGTGTAGCTAAACAAGAAGTATGATCCTGAGGATAAGAACC
ATATCGTTCGCATATACGACTACTTCTTACATCAAAGTCATTTGTGCATATGCTTTGAACTTCT
AGACATGAATCTGTAAGTTCTATGACTGAAGTATTATTCTCCTTCTATCTTTCTATGTGTTTAT
CCTCTGATTTCCTTCATGCAAACTGTATAAAGTGTTTGTTGGTGACAATTCTATTGTCCTTCGT
AATATATGGTCTCAGGTATGAGCTCATAAAGATAAATCAATTCAGAGGCCTATCATTAAGCATA
GTCAAGCTCTTCTCTAAGCAGGTATTTATATTTTTATAGATCTATGTTTTCACTGTTTTGTTTC
TTTCTCATTCTCTTAATCTACAGTATCAACTGTTTTCGTATGGTGTCCCATAGATCTTACTTGG
TTTGGCTCTTTTGAAAGATGCTGGCATAATCCATTGTGATCTGAAGCCAGAGAATATTCTTCTG
TGCGCCAGGTCTACTTTCTAGCACCAATCCTATCAAAATTTTAGTTAAAAACTTTAATTAACTT
GTTTTCTTTTTAATTTTATCAGTGTGAAGCCAACTGAAATTAAGATAATTGACTTTGGATCAGC
GTGCATGGAAGATAAAACTGTTTATTCATATATTCAGGTTTCTTCTTGCTTTCTGTTTATATAT
CTGCTAGATTATGTCATAACAAAAAAATAACTAAGCTTGCTGGTCAATCTTTCTACAGAGTCGT
TACTACAGATCGCCGGAAGTCTTACTTGGTTACCAGTATCCTTTTGAGGTCCAAGATGATAACC
GTTTTCTCACCTAAATTAATATGTTTTCTCTTAGTCCTTTGGCACTGAACTGTCATATGTCAAT
GGACATAGGCTTGTTTTAGCACTATGATCATGTGACTCTTATTGATCTATTTGGCCAACTTGCG
TTAACTTTGTCGATATAGTTCCAGCAAATTGTTAGTTTCCTATCAACATCAATTTGACTGCAGA
CTAAATTTCGTTGCTATTTTGTTCCTATGGTAGATGCTATCTAAAATTATCTTGAAGTCGTATT
TGGAGGCTTAACCACTGTATAGATACACTACAGCTATTGACATGTGGTCTTTTGGCTGCATTGT
TGCCGAGCTGTTTCTTGGATTGCCACTATTTCCAGGAGGTTCAGAATTTGATATCTTGAGGCGT
ATGATTGAAATACTAGGGTATGATCCTTTGTTATGGAATTGTGATTTGTAGTCTATAATCTTAG
GGGTCAGGGAATATTTGGGGTCTGCACCTTATGGTCCATCCTCATTCTCTTGCGTCTTTTGTTT
CATATATTGGTCTCTTATATATTGGGTTTAGCCTATTGTTGGTGCTTTATGGTCATTCTTTCAT
TGCCCTATGTCTCCAGCAACCCCCTATTTTAGCTTCTCAACGTTTGTGCAACTATGAAGTCCTC
GCTTCTATATAAGACAAGTGTCAAGATTTCTAGCAACGAGGAGCTTTTCTTATTTTCTTTCATG
CCTTTTTTATTTTCTCTTATGATTCTATCAATTTTCTGTCAATTTTTTTCCAGCAAACAACCAC
CTGATTATGTGCTCAAGGAAGCAAAAAATACGAATAAGTTCTTTAAATGTGTTGGGAGTGTCCA
CAATTTAGGGAATGGTGGAACTTATGGTGGCCTCAAAAGTGCTTATATGGCTTTGACTGGAGAA
GAGTTTGAAGCTGTAAGTAATTCTTGCTTTACCTTTGAGCTAAACAAAAATATAAAGAGAGGGG
TGGTATGGGGAGAAGAGAGCAATACAGAAATGAGTATTAAAAACCAGGAAAACGATTATATCTG
TGGATAAAGTAGATTTAGATTGTTTGATGAGGGGATTAATTTTCTTCTTACATTGTCATTAAGA
TTTCCCCTTATTGATTTTTTTTCTGAATAACTCGTGTTGTTCTTTACTTTTAACTTTCCAGAGA
GAAAAGAAAAAGCCAGAAATTGGGAAAGAGTACTTCAACCATAAGAACCTTGAAGAAATTGTTA
AAAGCTATCCGTACAAGATAAATCTACCTGAGGACGATGTAGTCAAAGGTAAAGTCAGGTTGTT
CTGATGTTCTTTACTTTGCTTTGATAATCACTGGACTATCTTGCATGATGACTGTTTTTTTTTT
TTCACGAACTATCACAGAAACTCAAATCCGGTTAGCTCTTATTGATTTTCTGAAAGGACTTATG
GAATTTGATCCAGCAAAACGTTGGTCACCTTTTCAGGTATTGAACTTCCTTGCTTAAGTTATCT
ATATATTTGATTTTGAAGGCTTCTGTTTTTTGCTAGCCATAATGGATTAACATCAACTTTTCAT
GTTTTAAGGCAGCAAAGCACCCTTTCATTACTGGAGAACCTTTTACGTGCCCATACAACCCTCC
GCCAGAAACACCTCGTGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.13898656
Functional Information
Coding potential Y
Potential coding position 14130697-14133012(+)
Potential amino acid sequence MNLYELIKINQFRGLSLSIVKLFSKQILLGLALLKDAGIIHCDLKPENILLCASVKPTEIKIID
FGSACMEDKTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGGSEFDILR
RMIEILGKQPPDYVLKEAKNTNKFFKCVGSVHNLGNGGTYGGLKSAYMALTGEEFEAREKKKPE
IGKEYFNHKNLEEIVKSYPYKINLPEDDVVKETQIRLALIDFLKGLMEFDPAKRWSPFQAAKHP
FITGEPFTCPYNPPPETPRVVVVRLTRDLVETYKICDPQFKYRGELNPKRYLTTPSVGVNNDGF
DNVNYDLILAVNDDFCSSDSRQRYIVKDLLGHGTFGQVAKCWVPETNSFVAVKVIKNQLAYYQQ
ALVEVSILTTLNKKYDPEDKNHIVRIYDYFLHQSHLCICFELLDMNLYELIKINQFRGLSLSIV
KLFSKQILLGLALLKDAGIIHCDLKPENILLCASVKPTEIKIIDFGSACMEDKTVYSYIQSRYY
RSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGGSEFDILRRMIEILGKQPPDYVLKEAKN
TNKFFKCVGSVHNLGNGGTYGGLKSAYMALTGEEFEAREKKKPEIGKEYFNHKNLEEIVKSYPY
KINLPEDDVVKETQIRLALIDFLKGLMEFDPAKRWSPFQAAKHPFITGEPFTCPYNPPPETPRV
VVVRLTRDLVETYKICDPQFKYRGELNPKRYLTTPSVGVNNDGFDNVNYDLILAVNDDFCSSDS
RQRYIVKDLLGHGTFGQVAKCWVPETNSFVAVKVIKNQLAYYQQALVEVSILTTLNKKYDPEDK
NHIVRIYDYFLHQSHLCICFELLDMNLYELIKINQFRGLSLSIVKLFSKQILLGLALLKDAGII
HCDLKPENILLCASVKPTEIKIIDFGSACMEDKTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSF
GCIVAELFLGLPLFPGGSEFDILRRMIEILGKQPPDYVLKEAKNTNKFFKCVGSVHNLGNGGTY
GGLKSAYMALTGEEFEAREKKKPEIGKEYFNHKNLEEIVKSYPYKINLPEDDVVKETQIRLALI
DFLKGLMEFDPAKRWSPFQAAKHPFITGEPFTCPYNPPPETPRVVVVRLTRDLVETYKICDPQF
KYRGELNPKRYLTTPSVGVNNDGFDNVNYDLILAVNDDFCSSDSRQRYIVKDLLGHGTFGQVAK
CWVPETNSFVAVKVIKNQLAYYQQALVEVSILTTLNKKYDPEDKNHIVRIYDYFLHQSHLCICF
ELLDMNLYELIKINQFRGLSLSIVKLFSKQILLGLALLKDAGIIHCDLKPENILLCASVKPTEI
KIIDFGSACMEDKTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGGSEF
DILRRMIEILGKQPPDYVLKEAKNTNKFFKCVGSVHNLGNGGTYGGLKSAYMALTGEEFEAREK
KKPEIGKEYFNHKNLEEIVKSYPYKINLPEDDVVKETQIRLALIDFLKGLMEFDPAKRWSPFQA
AKHPFITGEPFTCPYNPPPETPRV(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017