Plant Circular RNA Database

Detail information of TRIAE_CS42_1BL_TGACv1_030283_AA0085180_circ_g.1

			
						 General Information
					
						CircRNA Name
						TRIAE_CS42_1BL_TGACv1_030283_AA0085180_circ_g.1
					
						ID in PlantcircBase
						tae_circ_000004
					
						Alias
						1B:196713053|196715302
					
						Organism
						
							Triticum aestivum						
					
						Position
						
							chrTGACv1_scaffold_030283_1BL: 141370-143619  JBrowse»						
					
						Reference genome
						
							TGACv1.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							TRIAE_CS42_1BL_TGACv1_030283_AA0085180						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaves of seedlings
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						TRIAE_CS42_1BL_TGACv1_030283_AA0085180.2:9
TRIAE_CS42_1BL_TGACv1_030283_AA0085180.1:9

General Information
CircRNA Name	TRIAE_CS42_1BL_TGACv1_030283_AA0085180_circ_g.1
ID in PlantcircBase	tae_circ_000004
Alias	1B:196713053\|196715302
Organism	Triticum aestivum
Position	chrTGACv1_scaffold_030283_1BL: 141370-143619 JBrowse»
Reference genome	TGACv1.38
Type	e-circRNA
Identification method	CIRI
Parent gene	TRIAE_CS42_1BL_TGACv1_030283_AA0085180
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	NA
Support reads	NA
Tissues	leaves of seedlings
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	TRIAE_CS42_1BL_TGACv1_030283_AA0085180.2:9 TRIAE_CS42_1BL_TGACv1_030283_AA0085180.1:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCTCTTGGCGAGGATCCACCTGCTATTACTTCACTTTGCTTCAATCACAATGGGAAGATCTTGG
CAGCATCTGCAACAGATGGCATGATTCACATGTTTGctcttttgaagattagcactgaaaagaa
catgatcaagtgcctcaagagtgacataaagcaactgaataacaaattgtcagaactgcaagca
ttgttaga

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCTTTTGAAGATTAGCACTGAAAAGAACATGATCAAGTGCCTCAAGAGTGACATAAAGCAACT
GAATAACAAATTGTCAGAACTGCAAGCATTGTTAGAGGTGAAGGAAGTTGAACTATCTCTGCTG
AGAAGGTAAAGCTATGCTCTTTGGACTGCAAAATTGCTCATATATCTTCAGATGCATGGCCTTT
TGTAAATAGGCTATCATCTGTTTGCAACTTTGCATACGAATAGCTGATTTACAGATGTGATAGA
ACTAATAAAACTAGGTTCATCAAGTGCTCTTAGCTCCAGCTTTCTTCACTATTAGGTTACATAG
CTTATCATTGTAGAGTATGACGTAGAATGTGACTGCTAGAGTTTTTGCGAATCTCAAGCGCCTA
TGGGTATCCACTAAATATCTCGTAACTGATAAATACAGGAGTGGTAATAGTATTGATTCTGGAC
ACAAGAATTTACTCGAGATTACTACATTTGGTTCTTCCGTTGATGGACAAGCTTTCTCAGGAGT
CTACGAAGAATCCTCAACTTCAAGTATACAGGGTGTTGATTCACATACTTTGAGTTCAGTAAAA
TCAAGAGATGAGAAATTGTGTGATTCTTCTAGGATGAGCAATGCAGGTTGGCTCCTTTTACTAG
CTAGTTTTTTTTCATACCATATTTTTTTTGGACTGTGGTTTTCTCAAGCATATGTATGATTATT
TACCATTGGGTTATGCGAGGTAACTAAATTTTTTTGGTCTGCCGACAAGTACATAACCTTTCTT
TCCCATCAACCATTCTAATATCCACACTTTGGATTACTTTTATGCTTCACCGAGCATATATTTC
TATTTTGATGTTCTTCAATGTATTTGTTCTGTACATGCCCATTTAGGATACTACATTGTCTTAC
ATATGAAAACCTTGAAGAATAATATGTTTCTTTTGTTGCAGAAAATGAGCAGATTTTGGTGTCA
GAGGAAGATTTTCCTGAAGTGAAGGTGGATTTTCAGGTACGCTATAGTTTATCCCTAGTAATTA
TCCATCTTTGTGGTTTCCTATATAACTAATTAAACCTGCTAACAGGAAACATTTTTAGGCCATA
ACAGTTCCATAAGTAGCTGTCGGTTTTCTGCTTCTGGATCAAATATTGCCAGTTCTTCGACTGA
TGGCACAGTGAGGTAATTGCGCTATCTTGATTCTGATTTTTTTTTTTCCTAACTGAAGTTTCTA
GACTTTGACCCGTTGATTTTTCAAACTCTTATAAAGAATCTGGACATACGACTCATCAACACCA
TCATCAAAAAATGCAACTATATACTGTGGAGCTGAAGTCAGCGCACTTTCTTGGGAATGCAGAT
CTGACCGCTTGGTATGTCTATTGTATATTTTAATTTTACCACGTTAGTTTTTCCACACCATTTC
ACCTTTGAAGAACATATTTTAAGACTTTTGTTTTTATCACCCATTTCTCTTGACAATAGCTGCT
CATAGGCACAGCTAATGGAGGCATTAAAGCTTGGAATGCTGATGCAAAGAGAGTTGTTTGTGAC
CTCAGTACATCCAAGGACTTCCCAAGGTTAGAAGTTACCACCTATTACTTTTGGGCTCACAGCT
CTATCTATGCTGATGAAGCTTTTCAATTTCTTGCAGTGTGCTTGATTTGAAGTGTAGCCCTGTA
GATCCTGTGTTCGTCTCTGCAGCTGCATCGAGACGGTAAACCTCAGATTTCTTGCTTTGTAAGA
AATCAGTTGCCAGTTGCTGCAAAATGGCAGCTTCTTTCTCCTATAAAAAAGCTTTACTGCTAAA
CTCCTGTTTCTGACAGCAGTGTTTTGTCCTATTTTCACATATCTATTTAAACTATAAAAGTAAT
ACTAGTTTTAGCATGACCTATCTACAACTAGTAGTATAGCTCTCAAATACCTTTGTCTTATTGT
ACCTTCAATTGTTATTGTCTTATTTCCAGCTTTAAATTACTTTTCAGGCATGGGTCAACTATAT
TTGACAGAACAGGATTTGCCTCCTTGACAGTATGGCATATGAAAACATGGAAGCCTCTGGTACT
GATTTTTTTTCTTTCAACCCCTTATCTTGAACGTAGCGGGAGTCTCTAGCCAGTAACCTTTCCG
TTATGTATTTCCGTTTCTTCTATTTGAAGACAGTCCTCCCTCTTGGCGAGGATCCACCTGCTAT
TACTTCACTTTGCTTCAATCACAATGGGAAGATCTTGGCAGCATCTGCAACAGATGGCATGATT
CACATGTTTG
						
					

			
		

Sequences
Splice junction sequence	CCTCTTGGCGAGGATCCACCTGCTATTACTTCACTTTGCTTCAATCACAATGGGAAGATCTTGG CAGCATCTGCAACAGATGGCATGATTCACATGTTTGctcttttgaagattagcactgaaaagaa catgatcaagtgcctcaagagtgacataaagcaactgaataacaaattgtcagaactgcaagca ttgttaga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCTTTTGAAGATTAGCACTGAAAAGAACATGATCAAGTGCCTCAAGAGTGACATAAAGCAACT GAATAACAAATTGTCAGAACTGCAAGCATTGTTAGAGGTGAAGGAAGTTGAACTATCTCTGCTG AGAAGGTAAAGCTATGCTCTTTGGACTGCAAAATTGCTCATATATCTTCAGATGCATGGCCTTT TGTAAATAGGCTATCATCTGTTTGCAACTTTGCATACGAATAGCTGATTTACAGATGTGATAGA ACTAATAAAACTAGGTTCATCAAGTGCTCTTAGCTCCAGCTTTCTTCACTATTAGGTTACATAG CTTATCATTGTAGAGTATGACGTAGAATGTGACTGCTAGAGTTTTTGCGAATCTCAAGCGCCTA TGGGTATCCACTAAATATCTCGTAACTGATAAATACAGGAGTGGTAATAGTATTGATTCTGGAC ACAAGAATTTACTCGAGATTACTACATTTGGTTCTTCCGTTGATGGACAAGCTTTCTCAGGAGT CTACGAAGAATCCTCAACTTCAAGTATACAGGGTGTTGATTCACATACTTTGAGTTCAGTAAAA TCAAGAGATGAGAAATTGTGTGATTCTTCTAGGATGAGCAATGCAGGTTGGCTCCTTTTACTAG CTAGTTTTTTTTCATACCATATTTTTTTTGGACTGTGGTTTTCTCAAGCATATGTATGATTATT TACCATTGGGTTATGCGAGGTAACTAAATTTTTTTGGTCTGCCGACAAGTACATAACCTTTCTT TCCCATCAACCATTCTAATATCCACACTTTGGATTACTTTTATGCTTCACCGAGCATATATTTC TATTTTGATGTTCTTCAATGTATTTGTTCTGTACATGCCCATTTAGGATACTACATTGTCTTAC ATATGAAAACCTTGAAGAATAATATGTTTCTTTTGTTGCAGAAAATGAGCAGATTTTGGTGTCA GAGGAAGATTTTCCTGAAGTGAAGGTGGATTTTCAGGTACGCTATAGTTTATCCCTAGTAATTA TCCATCTTTGTGGTTTCCTATATAACTAATTAAACCTGCTAACAGGAAACATTTTTAGGCCATA ACAGTTCCATAAGTAGCTGTCGGTTTTCTGCTTCTGGATCAAATATTGCCAGTTCTTCGACTGA TGGCACAGTGAGGTAATTGCGCTATCTTGATTCTGATTTTTTTTTTTCCTAACTGAAGTTTCTA GACTTTGACCCGTTGATTTTTCAAACTCTTATAAAGAATCTGGACATACGACTCATCAACACCA TCATCAAAAAATGCAACTATATACTGTGGAGCTGAAGTCAGCGCACTTTCTTGGGAATGCAGAT CTGACCGCTTGGTATGTCTATTGTATATTTTAATTTTACCACGTTAGTTTTTCCACACCATTTC ACCTTTGAAGAACATATTTTAAGACTTTTGTTTTTATCACCCATTTCTCTTGACAATAGCTGCT CATAGGCACAGCTAATGGAGGCATTAAAGCTTGGAATGCTGATGCAAAGAGAGTTGTTTGTGAC CTCAGTACATCCAAGGACTTCCCAAGGTTAGAAGTTACCACCTATTACTTTTGGGCTCACAGCT CTATCTATGCTGATGAAGCTTTTCAATTTCTTGCAGTGTGCTTGATTTGAAGTGTAGCCCTGTA GATCCTGTGTTCGTCTCTGCAGCTGCATCGAGACGGTAAACCTCAGATTTCTTGCTTTGTAAGA AATCAGTTGCCAGTTGCTGCAAAATGGCAGCTTCTTTCTCCTATAAAAAAGCTTTACTGCTAAA CTCCTGTTTCTGACAGCAGTGTTTTGTCCTATTTTCACATATCTATTTAAACTATAAAAGTAAT ACTAGTTTTAGCATGACCTATCTACAACTAGTAGTATAGCTCTCAAATACCTTTGTCTTATTGT ACCTTCAATTGTTATTGTCTTATTTCCAGCTTTAAATTACTTTTCAGGCATGGGTCAACTATAT TTGACAGAACAGGATTTGCCTCCTTGACAGTATGGCATATGAAAACATGGAAGCCTCTGGTACT GATTTTTTTTCTTTCAACCCCTTATCTTGAACGTAGCGGGAGTCTCTAGCCAGTAACCTTTCCG TTATGTATTTCCGTTTCTTCTATTTGAAGACAGTCCTCCCTCTTGGCGAGGATCCACCTGCTAT TACTTCACTTTGCTTCAATCACAATGGGAAGATCTTGGCAGCATCTGCAACAGATGGCATGATT CACATGTTTG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.606634044

Conservation Information
Conserved circRNAs	NA
PMCS	0.606634044

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Wang et al., 2017

circRNA

Detail information of TRIAE_CS42_1BL_TGACv1_030283_AA0085180_circ_g.1

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