Detail information of BGIOSGA011288_circ_igg.2


General Information
CircRNA Name BGIOSGA011288_circ_igg.2
ID in PlantcircBase osi_circ_004602
Alias 3:5395274|5397080
Organism Oryza sativa ssp. indica
Position chr3: 5395274-5397080  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA011288_circ_igg.1 BGIOSGA011288_circ_g.1 BGIOSGA011288_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGATTTACCATATTATGAGGGCTGCTGATAAAGCTTCCACACAAGACAATTCACATGGACGAC
CATAATTGACAGGGTTTGCCGCAACCAACCATGGCActgtccattgcaatgactaaaccagctg
ctgtccattgcaattttgttttcttcatgtctgtacttaagactggaacagagaaactcaaatg
attttagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTCCATTGCAATGACTAAACCAGCTGCTGTCCATTGCAATTTTGTTTTCTTCATGTCTGTAC
TTAAGACTGGAACAGAGAAACTCAAATGATTTTAGCAAGCGCAACGCAATAAGGGTACTGTGAT
TCTTTCTGAGCCATGATCTGTCCTCAAGACCATTGAAGATTGTTTTCATTGGACATCGGAAGAT
CCTATTTTGGCTCGAATCACAGCACTTAGCCAAAAATTAACTTACTCAAGTACACATTTAAAAG
TGCTGGACAGCTCCAAATGTTCCCTTCTGACGCCATTTGTTACTCATCACTTTCACTTTCCTCC
TCACTTTCGTCATCTTGGTTAAAGTTCAGGTGATTCAGGTTTTCCTCTAGAGGTGGCAAGCCAT
CGTCGGAGTCAGCGTCAGATCCTTCCTCTGTGCTTTGGTGTGATTTCTCTGCCGCTATGACGCG
GAAATATTGAGGGTCAATATTTGCACTCTAAAAATGGTTAGCTTATGGCAAAAATAGCTGAGAT
GTAATTATTACCGTTTACAGGTGACTTTGGAACATTAGAGTTACTTGACAACCAAGAGTTCTGC
ACATTGATTATCTCGGTGCCATTTTCACACTGCGAGTATGCTTTGAGCAGCTCTCTGCACATCA
TAACAACAAAAGGGTGCGAAAACATCTGGTGACACAAATCTAAAATAAATATGCAATACATAGT
ATCCAGTCTTCATAAACATAATGCAGTAACAGAGAAAGTTGCAATCATTTGACCATCATATTCA
GAAATCCTTGGGTACCATGGGTTCTTAGCATGATTCAGTGTACATTGTCTTCTGAAATTTGCTG
GATAAAGGTAACAACACCGATACAATATAATATGCAGGATAGCTTATTTTGTCCTGTCATCACC
CCAGATTAGGCCAGTAATTAGCATGTTGAAATTTGAAATGTAAACTAATATGCTTCAATCTACT
TAATTGCTGTGTGCAGGTGCTGGGTTTGCAGAAAAGTAGTATATTATATATGAATATGCACTCC
CTTGATCATAAACAGATACTGTGTGCCCAGAATGCACTGCCAGTCTATGCATGACAATAAAATA
TTTCTCTGAACTAACCTGTTAACTGACAAGAACGAGTGACCCCACTTGAATTTCCCAAGCAACA
GATGCGCTGTCTCTTCCTCCCCACTGCAAATATGTATGTACCACAAGGTAATGCCTAAGTATTA
AGTAACTATCCCTCCGTTCATTTTTGAAAGGCACAAATTACTTGGTACAGTCTTTCAAACTGAG
CTTTCCCCTTAATCTATTGCATTACTATTATTAATCAGAAATTCATGACCATATGTAAGTACAT
TGATGTACAAATCTAGTGGCATCATCCTTATATCACTAAACCTATAATTAGCATAATTGTTGAC
CAAAACAAAGTTTGAATCTTGAAATATGTGTGTGCCTTACAAACTTGAACAAAGGGAGTAATAT
CCTGAGCTACAAATTCACATCAAGAAGTTTAGCATGGTAGAAGGATTAAATGCTCTAAGTTAGT
TAAACTTGAAATGCCAAACAGCAACACTGCTACAGAAAAATGCGTAAATGACGGCATACACCTA
TAAAACAGACCAATATCATGAACAGCTGCGATGAATCCAGAAACTAAACTAACTATATGGTCCA
AAAGTTTAAATTAATAGCTCAGTTTAATTGTAAGGAAAGGCTGGAGATTTACCATATTATGAGG
GCTGCTGATAAAGCTTCCACACAAGACAATTCACATGGACGACCATAATTGACAGGGTTTGCCG
CAACCAACCATGGCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021