Detail information of Os03g0616700_circ_g.4


General Information
CircRNA Name Os03g0616700_circ_g.4
ID in PlantcircBase osa_circ_020656
Alias NA
Organism Oryza sativa
Position chr3: 23373371-23374449  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0616700
Parent gene annotation Similar to Importin-beta N-terminal domain containing protein, e
xpressed. (Os03t0616700-01)
Parent gene strand -
Alternative splicing Os03g0616700_circ_g.1 Os03g0616700_circ_g.2 Os03g0616700_circ_g.3
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0616700-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATAATATGAAACAGAAGCTAGTGAGAAGACTGTACAGAATGATTTGCAATTATAAATTTTGTA
CTCTCCAGCTTGAGAAGCAGTTTTCCAGTCATATAGctcttgaaagaacagcaagtgatatcca
tatgcctttgtatttacttccataaatatcagtgccgtttggaagtaacagaatacgtgatcca
taagccac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTTGAAAGAACAGCAAGTGATATCCATATGCCTTTGTATTTACTTCCATAAATATCAGTGCC
GTTTGGAAGTAACAGAATACGTGATCCATAAGCCACAATCAGCTTGCTAACCTCCCGGAATAAA
AGGATCCCATTTGGTGATGACGAATCAAATGTCAATCTCTGAGCTTTGTTCAAAACAAACTCGC
ACATAAACTTGAGCAGGGGTGTGGTGACCTGTATGAACACAAAGTTGTGATTTTATAGTAGCTG
AACAAAAAAAACATAAGGCTCTAGATAATTTTTAAAAAACAGTTCAAACTTTTTCAGCAAGAAC
AGCTATGCAAGGAAAGCATTGCGATTTCATAGTTACCTCTGGCTCATCAGCGTAGAGTGAGATG
GCTTTCAATAAAAGTGGCATGCGAGATGGATACAGCCAGTCAAATAGGAGGCCATAGGTCCTGC
GGCTGGATCAGACCAACAAAAGTAGTTAGTTTCCAAAAGAAGAGTTGATGTACACATATACTAT
ATATAATCAAATTGTGCACCTGTTTGTGGCCATAGCAATGCCTCGTAAGTCTCTCATCAAACCA
ATAAATGCGTACTTCACAACATCAGTCCGGAAAGCAGCATCAGCAGTTGCCTCCAAATTAACTG
CAACCTATAGAGAATACAAAGAAGAAAACCATATAAGAATAGAGAAAAAACTTAACTACTACTC
TCTACGCCCCAAAATATAGCTATTTCTACCTACGATCTGGACAGGGCCAGATATAGAGGGAGTA
TGAATACAAGTAGCAATGCACCTGTAGGAGTGGCTCCATGAAACTCCTGAATTTTACTGGGGTG
TCTTCCATGAAAATCAAGCAGCCAAGGATGTAGTAGAAGGTTGTTCTACTGCGGGCACATCTGT
ATTCTTCAAGAAATGGAAAAGTCTCCCTCTGAAAATATCAATAATGAAAATATAATCAATTCTA
AGACCAGGAATGACACAGGGATAATATGAAACAGAAGCTAGTGAGAAGACTGTACAGAATGATT
TGCAATTATAAATTTTGTACTCTCCAGCTTGAGAAGCAGTTTTCCAGTCATATAG
Conservation Information
Conserved circRNAs osi_circ_008925
PMCS 0.175598602
Functional Information
Coding potential Y
Potential coding position 23374390-23373420(+)
23373401-23374444(-)
23374447-23374444(-)
23373465-23374386(-)
Potential amino acid sequence MICNYKFCTLQLEKQFSSHIALERTASDIHMPLYLLP*(+)
MDITCCSFKSYMTGKLLLKLESTKFIIANHSRETFPFLEEYRCARSRTTFYYILGCLIFMEDTP
VKFRSFMEPLLQVAVNLEATADAAFRTDVVKYAFIGLMRDLRGIAMATNSRRTYGLLFDWLYPS
RMPLLLKAISLYADEPEVTTPLLKFMCEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRI
LLLPNGTDIYGSKYKGIWISLAVLSRAI*(-)
MTGKLLLKLESTKFIIANHSRETFPFLEEYRCARSRTTFYYILGCLIFMEDTPVKFRSFMEPLL
QVAVNLEATADAAFRTDVVKYAFIGLMRDLRGIAMATNSRRTYGLLFDWLYPSRMPLLLKAISL
YADEPEVTTPLLKFMCEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRILLLPNGTDIYG
SKYKGIWISLAVLSRAI*(-)
MDHVFCYFQTALIFMEVNTKAYGYHLLFFQELYDWKTASQAGEYKIYNCKSF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017