Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0616700_circ_g.4 |
ID in PlantcircBase | osa_circ_020656 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 23373371-23374449 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os03g0616700 |
Parent gene annotation |
Similar to Importin-beta N-terminal domain containing protein, e xpressed. (Os03t0616700-01) |
Parent gene strand | - |
Alternative splicing | Os03g0616700_circ_g.1 Os03g0616700_circ_g.2 Os03g0616700_circ_g.3 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os03t0616700-01:5 |
Conservation Information | |
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Conserved circRNAs | osi_circ_008925 |
PMCS | 0.175598602 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
23374390-23373420(+) 23373401-23374444(-) 23374447-23374444(-) 23373465-23374386(-) |
Potential amino acid sequence |
MICNYKFCTLQLEKQFSSHIALERTASDIHMPLYLLP*(+) MDITCCSFKSYMTGKLLLKLESTKFIIANHSRETFPFLEEYRCARSRTTFYYILGCLIFMEDTP VKFRSFMEPLLQVAVNLEATADAAFRTDVVKYAFIGLMRDLRGIAMATNSRRTYGLLFDWLYPS RMPLLLKAISLYADEPEVTTPLLKFMCEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRI LLLPNGTDIYGSKYKGIWISLAVLSRAI*(-) MTGKLLLKLESTKFIIANHSRETFPFLEEYRCARSRTTFYYILGCLIFMEDTPVKFRSFMEPLL QVAVNLEATADAAFRTDVVKYAFIGLMRDLRGIAMATNSRRTYGLLFDWLYPSRMPLLLKAISL YADEPEVTTPLLKFMCEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRILLLPNGTDIYG SKYKGIWISLAVLSRAI*(-) MDHVFCYFQTALIFMEVNTKAYGYHLLFFQELYDWKTASQAGEYKIYNCKSF*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |