Detail information of BGIOSGA022109_circ_g.2


General Information
CircRNA Name BGIOSGA022109_circ_g.2
ID in PlantcircBase osi_circ_006456
Alias 6:301196|304379
Organism Oryza sativa ssp. indica
Position chr6: 301196-304379  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA022109
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA022109_circ_g.1 BGIOSGA022109_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA022109-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCAGCGGTGTGTTGGTGATTGTTGTGGGTGAGCATGTAATAGGTTCGCATTTCCTCGAGCATC
TCCTTGTGCTCTGCGTGGAGGAGGGCGTCCAGGCATggagatgaggctaaactctcaaatttgt
agttcacgacataagccaacaaacctattacggtagcaatatccaaccttacctgtattaggga
agaaaaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGATGAGGCTAAACTCTCAAATTTGTAGTTCACGACATAAGCCAACAAACCTATTACGGTAG
CAATATCCAACCTTACCTGTATTAGGGAAGAAAAACATAACTATAGGTGCAGAAAACGGGGGAA
TAAGAATAGCAAACGGAATAGCTGTATAAACAGATGAAATGGTAAGATCTGTTTTCATGGGGAG
GGATAAAATGACAAGAATTACTGTATCTAGGATGCGGAAGGACAACTTCTTGTGAGGAAAAACC
ACCTGCAACAAAAGTTTAGCCTAGTAGTCATTATGGTTTCGATATGCTCGATTTTGTAGGATGA
TAGATCTGCGTTGGAGTTTATTTAATCATTTTTTTCCATTTTAGTAGACATCATAGATAATCAA
GGCTTGTAAATGGTAAGATGATAGTGCCAGGCGGAAAAAATAGTAGATGATAGTAATCTGAATA
GCACAAACAAAATGTGAGACACTATACTTTTTCAATAGGTGTAAGATACTCAGCACACTTACTG
GCAGATCAGGGATGGGGATCCTTTCAAAAATTTTCAGTTGCAATGGCATCATGTCTGATTTTTC
TCTCTCTTTGCTTTGATCAGCCTCATCAGTATAAAGTAGGATCAGTTCTTGGAATGCTGGTTCC
TGACGAAGAACAAGCCAGAATTTAGCATTTCCTTTGCAAGCTAGCTTCTTTAAAGAAAAATATT
TGTACTTTTCTGGCATCCTATATAATATAGAATTGTAAAGGATAATAACAGAAACCATTTCAAT
ATTGTCAATTTTCTCACCATAATAGTGATACCAATGTTTAGTCCAAAGGCTGTGTATTCTATAC
ACATTTGAATTGCTTCCTTTACTTTCAATTCATTACCCAAGGTGTAACACAAGTCCATATATGT
TGTATAGCAGTACACCTGCTTGGTTTTGTGATTTTGATGTTGGGTTCGAGTACATGGTCAATCA
ATCATTCAGTCAATATCCCAACAGTCTAAACATTTTTATCATTTAACATAATGAATATTTTATA
AATATATGTAGGCACCAAAATTAATTAGCTATTAGTAAGAAACATGTTTCTACAACTCAAACAT
TGTAGATACCTGAAGAGTAGACTTCCCAAATAAAACACCAAAAGAAGCTTTTGTTATCTCCCAG
AGATTGTTGTTACAAGATTCTCTGCTTGCTGGCGCCCATATATTTGCAAGTGTTATTCTTGGCA
GAAAATTTGGCCTACAACCAGCGCCTTATTCAGTAAATCTAAAGAGCATCACTTACTAATGTTA
AACATATCTCAATAGTTATTTTCCCAAAAGAAAGAACCAAGAAACAAAGTTGAACAATGGTGCT
TATTGATGGCTTGCTAATAAATCCAATAAGGTTAAACAAGGGTCTAACCTCACATAGCCTTCAA
GATCTTTTGTATCGATATCTGACTTTATTGTTGCTTCTGGCAGAGAAGGGATTAAACCAGTCCA
AGTAAGCAATCTTCTTAGAAGTCTGCCACGAGGACCAACTGGTGACAGGATTCCTTCGTAACGA
GAGACTGCCCTTTGAGCAGCAATCCAAATAGGAAGATCAGCATCCGGTAATTGATCAGATCTAA
GTTTATCCCATGAAGAGTTCTCAATCAACGAAAGCGAATTCTCCGCATAGGTTTGCTCTTTAAG
CCAGACTTTAAGTTTTTCAATCCAGATCTGAAATCCCTCATTCCCTGTTGATCTTTTCAATGCC
TGCCATGAACTAAATAATCACATACAATTAGCTAAAAATTGTTACATGCACGCAACATCAAACT
AGTAGTAATGGGTCTAGCAATCAACCATACTTAAAAGAGTTGAAAAAAGGAGTACAACATGAGT
GCCAATTTATAACACAATGCCTACACATAGACAGGATGAGAAGTTGAGAACTGCAATAGTCAAA
TTGTCTTAAAAATTAATTTATATGCGATCCTAACTTGAATTTTGTTAATAGCCTGGCCAGCTAA
TTTTGGAATTATCTTTTCTTTCATAATTATTTTACAATTATCTAAAATAGTACAGGGGCTACAG
TGATGTACACTGATGTATGTTTCAGACTGTTCACGTAACAACTAAAGATAATGATGTCTTCTGC
ATAATAACTTTGCCTCTGTATTTAGGAACACAGATCCCAAGAATAAAACAGTTAGAACCATTTG
CGAGTATATGTCTCAGGTTATGAAAAGACTAGGTTGAATTCTAACTTCATTTGTGCACGATCTA
AGATTGATGCTACTATCTGTTGGTCCAAACCATTCATTGGTTACTACAGTACTGGTCGTGAGTG
GAAACTGGGGCAGGTTGAATTGTTAACACTACCAGGACAGTGCAGTATAAGAAATAATTTCTTT
TATATGATGAGCAAGAAATTAGCATAACACATTAGGATGGAAAGATTAACTGACCTCATTGAGC
CATTTCCCCAGCTTCCTCAAGGGCTTGGAGAAGCCAAAGAAGATATTTTGCAAGAGTTTAGACT
GTAGGTAATCAAGCTTTTCAACCAACAGTAGGCCCTTCTGCCTCTCCGTTGCATACCCACGCCT
GTGAAGAAAAAGGGTTATATATTCATTCGTACCATGGTGAGTTACATGTGTAGATAGGCTATCA
GGTTGCAAAAAGGAAACAAGAGGGGTTACCTGAATATGATAGCATTGGACTCAGCTGCCTTTTT
CCAATCGACATAAATGGGCAAAGTCAAGAGGTAATCGGTGTTTAGGGCGTATGTCAAGAGCAGG
TCTTGCGCAGAGAGCTCTTCAAATTGAGCATTGCGCAGAAGGTTCATGAAGGAGCGCTGGAAAT
GAGTTGCAAAAGCAATTCTGGAAACAAGTGCGTGTTGAGTTGAGTTATCAGCATAGGCACAGTA
TATAGTACTAGTAAGTGGAAGTGAAGAGGATCCGATTAATTGTTACCTGTTGTGTGAATCAGGG
TCTGGTGACAATCCCAGGAGTGTTCTGAGACCCAAGCTTCTGGTAAGAAGCAAGGTTCCGTTGT
CTGTAATGCCAAAAAAACCAGCAGTGGTGTTGGCGTTGCCGTTGAGCACGGGTTGGTCATCGTC
ATCGTCATCAGCGGCAGCGGTGTGTTGGTGATTGTTGTGGGTGAGCATGTAATAGGTTCGCATT
TCCTCGAGCATCTCCTTGTGCTCTGCGTGGAGGAGGGCGTCCAGGCAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 304344-301198(-)
304379-301256(+)
Potential amino acid sequence MLEEMRTYYMLTHNNHQHTAAADDDDDDQPVLNGNANTTAGFFGITDNGTLLLTRSLGLRTLLG
LSPDPDSHNRIAFATHFQRSFMNLLRNAQFEELSAQDLLLTYALNTDYLLTLPIYVDWKKAAES
NAIIFRRGYATERQKGLLLVEKLDYLQSKLLQNIFFGFSKPLRKLGKWLNEALKRSTGNEGFQI
WIEKLKVWLKEQTYAENSLSLIENSSWDKLRSDQLPDADLPIWIAAQRAVSRYEGILSPVGPRG
RLLRRLLTWTGLIPSLPEATIKSDIDTKDLEGYVRPNFLPRITLANIWAPASRESCNNNLWEIT
KASFGVLFGKSTLQEPAFQELILLYTDEADQSKEREKSDMMPLQLKIFERIPIPDLPVVFPHKK
LSFRILDTVRLDIATVIGLLAYVVNYKFESLASSPCLDALLHAEHKEMLEEMRTYYMLTHNNHQ
HTAAADDDDDDQPVLNGNANTTAGFFGITDNGTLLLTRSLGLRTLLGLSPDPDSHNRIAFATHF
QRSFMNLLRNAQFEELSAQDLLLTYALNTDYLLTLPIYVDWKKAAESNAIIFRRGYATERQKGL
LLVEKLDYLQSKLLQNIFFGFSKPLRKLGKWLNEALKRSTGNEGFQIWIEKLKVWLKEQTYAEN
SLSLIENSSWDKLRSDQLPDADLPIWIAAQRAVSRYEGILSPVGPRGRLLRRLLTWTGLIPSLP
EATIKSDIDTKDLEGYVRPNFLPRITLANIWAPASRESCNNNLWEITKASFGVLFGKSTLQEPA
FQELILLYTDEADQSKEREKSDMMPLQLKIFERIPIPDLPVVFPHKKLSFRILDTVRLDIATVI
GLLAYVVNYKFESLASSPCLDALLHAEHKEMLEEMRTYYMLTHNNHQHTAAADDDDDDQPVLNG
NANTTAGFFGITDNGTLLLTRSLGLRTLLGLSPDPDSHNRIAFATHFQRSFMNLLRNAQFEELS
AQDLLLTYALNTDYLLTLPIYVDWKKAAESNAIIFRRGYATERQKGLLLVEKLDYLQSKLLQNI
FFGFSKPLRKLGKWLNEALKRSTGNEGFQIWIEKLKVWLKEQTYAENSLSLIENSSWDKLRSDQ
LPDADLPIWIAAQRAVSRYEGILSPVGPRGRLLRRLLTWTGLIPSLPEATIKSDIDTKDLEGYV
RPNFLPRITLANIWAPASRESCNNNLWEITKASFGVLFGKSTLQEPAFQELILLYTDEADQSKE
REKSDMMPLQLKIFERIPIPDLPVVFPHKKLSFRILDTVRLDIATVIGLLAYVVNYKFESLASS
PCLDALLHAEHKEMLEEMRTYYMLTHNNHQHTAAADDDDDDQPVLNGNANTTAGFFGITDNGTL
LLTRSLGLRTLLGLSPDPDSHNRIAFATHFQRSFMNLLRNAQFEELSAQDLLLTYALNTDYLLT
LPIYVDWKKAAESNAIIFRRGYATERQKGLLLVEKLDYLQSKLLQNIFFGFSKPLRKLGKWLNE
ALKRSTGNEGFQIWIEKLKVWLKEQTYAENSLSLIENSSWDKLRSDQLPDADLPIWIAAQRAVS
RYEGILSPVGPRGRLLRRLLTWTGLIPSLPEATIKSDIDTKDLEGYVRPNFLPRITLANIWAPA
SRESCNNNLWEITKASFGVLFGKSTLQEPAFQELILLYTDEADQSKEREKSDMMPLQLKIFERI
PIPDLPVVFPHKKLSFRILDTVRLDIATVIGLLAYVVNYKFESLASS(-)
MEMRLNSQICSSRHKPTNLLR*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021