Detail information of Solyc08g081770.2_circ_g.1


General Information
CircRNA Name Solyc08g081770.2_circ_g.1
ID in PlantcircBase sly_circ_002721
Alias NA
Organism Solanum lycopersicum
Position chr8: 64735594-64740582  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method CIRI; find_circ
Parent gene Solyc08g081770.2
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Solyc08g081770.2.1:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAATGAAGTACAAACAATTCAAATTGAAGAAAAGCAAAAACCTTGGGGAAGTCCTCAGACCAT
CCATGTTGTTTGCAAAGAGAATGCCGCCTAGAAAACtatctctattactgttactgctgcaaat
actaggaagagagcaccacctatgtaggcaataacctgaaaataagagattttgttcacttata
aaatgtgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TATCTCTATTACTGTTACTGCTGCAAATACTAGGAAGAGAGCACCACCTATGTAGGCAATAACC
TGAAAATAAGAGATTTTGTTCACTTATAAAATGTGCAAATAAACATCAAAAGAAACTTTAAGTG
CATTTGATACGACAGAAGTCATTTCCGAGAAAAAAAAATTCTCCATAAGAAAATCATTTTCTCG
TATTTTGTTACCGACCCTCAAAAGAGGAACATTAACTAACAACTTCCCTGACTTATGAGCGGAA
GTCATTTTCCTTTTTAGAGCGATGATAAATAGTATAAACGCGACATGACAGGTTGCTAAAAGGA
AGGCATTCTTCATGTTTAACAAGATATGAACTAGTCCAAAGTCTTGACAAAGCATTATTTGAGT
TTTCCAGATGACTTCTTCAGTCAACTAGAAAAAAATTAACTAATGAAGGTAGGTAAAAGGATGA
TTAAAAAATACAGTTTCTGTTTTATTCATTATGTAGTTTAGTATTCCATAAGCAACTCATTATA
ATATATTATATGAACTCTGTTGAGTCTAAACAGAGGTATAAGAGTAGTCTTAGGTACGGAGAAG
GGTGAAAAATGCCCCTAAACTATTATAAATAGAACAAAAGTATCGTCTGTTTGGTTTTTGGTCC
AAGAACACCCCTGAAGTAGTAGAAATGGGATAAAAATGCCCTCGTTGGTAGCAAACCTGCCCAA
TTATGCCCATATGAGCCATATCCTAATAACGGGCATAATTGGACCAATTAGCGAATGACAAGGG
TATTTTTGTCATGTTTCTAATAGTTCAAGGGCATTTTTGGACCCAAACCAAATGAAGGGTACTT
TATTCTACTTCTAATAGCTCAAGAGCATTTTTGACCCTTTTCCGTTCCAACAACTTGAAAGAAA
TGAAGAGATGTTATGCCAGTGTGTACTTTACTGCTAAAAAGTATGAACTTTTTCTACTTAGAGA
TTAAAAAAAAGAACATTTTCTTGTCATAGTGGTTCCGTAGAAGAAAACTACACGATAAATTTGT
TTCGAGCAGAAGATTCTGATGATCATATAAATGTCTGCCTCTTTAGTTATTCAGATAGAGTAAT
CTTACCTTCTCAGACAAGAATGTCCCCAGTAAAGAACCTCCAAGAACAGCCAACTGCAAAGAAA
ATTTCACTACCAATCAAATTTTTATGCGTATTGGACGCCAACACAGAAAGCAAGAAAAAGAACT
AATGCACTGATATATCTATGTCGTCATGGTTTATATAAACCACACATGTTATTCTTACGTCTAT
AAAAAAGTAGAACTTTGTAATGTACTGAAGGTTTCAAGTTAAAGGCCTTTCTTTTAAAAACTAT
TTTGCATTTCTTGATGAAATTTTCCTTCTAGTTGCTAATATTTATAAAAGAAGTCGCGTTGCAG
ATTGTACATGACACCTGTAAAAAGAAATGTTTTAGTTAACGGTCTGCATTTACCAAAGTTGCAG
CTCCGTGGCCAGCTAATGCCCCTCCAATGACTCCAAGAGGTGAAGATGCAGCAGCAAGAGCTGA
AAGTAGATAGTGTACTTGAAGTTAATAATCAAGTCTAGGACTCGTAGATAAATTCATCCAACAG
AGATTGAAATTCATTCAAAAATATTTTCTTATTCAGCTTCCGTAATGTTTTCAGATTGCATAAT
GTCTGGCTGTTTCGAAAAGAATAGACTCTTGTACAAGTTGATTTATAAGATGAACAAATGGTAA
AAACATAAGTTTCTGCATCAAACTTTGTATTACTAACCTATTGTAGAAAAAAATGATTTGTCAC
CCCATTCAGCAACAAATACCAATGCGAATGTACTAACTATGGTGCTTGCAGCAGACAATAGTCC
AGCACCATTTCCCGAAAATTCTGAAACAGCCAGCTCGGCCTGGTGTCAAAGCAAAGAGATCCGC
AATTAGGATATGCTCATTTGCTGATGCCCCAAACGTATCAACTTTCAATAGACGTCTGATAATG
AAACGTTAGTAGGGGAATCTAAGTAGCTTAGTTGGTTAACTACCTAAACTTTTACCTTGTTTAT
GAGGGTTCTTCCCACCTTTTAATTCCCTCCCGTATTCCCCGTACCCTAACCCCATTTTTTTTGC
AGTAATTCTACTTGTCATCTCGAAAAAAAGAAAAATACTTAATAGTAGAAGGGATGCTGATAGG
CTTACCTCTTTCTGTTCCTCTTCCGCTTTCATACCATCGCTAGAGGAGGCATCAAGCAAGGTTG
ACACTCCAAAATACACCTGTGACAAAATTGAATATATCCAGACATGTCAACTTCACATGACACG
TGGGTGCAAGTCATATCATGAATTAAATATTAGGATCATGTGTTACCAGAAGGCAAACGGCAGC
AATATCATCCACTGGCAAATCATTTCCACCTAACCTGCATTTACGAAGCTGCATCAGGATATAA
CAGATGAACCGCTCGTGATATATCTGTTATTTAAAGAATTGGAAGATGCTATTGAAGTCAATTT
GATAAAATGAAGTGATCCATCTAAATTACCATGCAGGTTACTACACTTCCCAATGTAAAGAAAA
ATGATCAAGATCACAGCTACGTGTTTTTTTTTCCTTACTCCAAGAGTGACAGACGAAAAGATGG
TTTGTAGATTGAGATAAAGAGCAGGAGATTTTTAACATGTAAGAAGTTAATACACCAGGAAACA
TATTAATTCGGATAAAAATTAAAGAAGGGCAAACATATTCTCGCACAGAAATGTGGGAACCAGG
TCAGTGGATGAAACCCAAGACAAGCAATTTGAACATAATTTACAGCAACCATCATGAGCCTTTA
ACACATCATTTCACATTCTATATTTACAATATTGATATATACTAGTTTTGGTACATATTACCCA
ACTTCTGAAATAATTTGTAATATCCTGTTTGCTCAAATTTCTAATCGAAACAACAATAACAATA
TTTTAAGGTTAGAGAGTTTGTAGGCGCATTAACCCAGAAAAACATGGCAAATTAAATTGCATTT
AGAAGAACTAGTTAAATGATCCGAAGCACACTACAAAATTATAGTAAAGAGTAGAGCATGTTAG
GCTCTTCGATTTTCTGAAAAGTAAGATCTAAGAAATGAAATGGACGTGATGTAGGAATATTAGA
TAGGATCCTCCTTCTATGAATTGTTGGAAATAATTTTTTACAATCTGCTTTTTTAGTAGACGGA
GTTTCTACATACTTGAGATGCATAATTATGCCAAAACTAAAAAGGTTAAAGAACCTGAAAGGAA
GAACATCATCGACATAGTGGAAAGTTCGTCCGAGAACAACGGATATGATTGTCATTACCCTGCA
AATGACACAGATAGAATTAACATAAAGAGAACAAATTTCTGAATAAAACATCTTCCACGATATT
TGAAAAGTTGCATTGACCTTATTGAGTTCTTCAATCTCTTAATTTTAACACGAGAACCAAATGT
TATAAGAACTAGTCAGGAATATATGTTAGCTCTTGAAAAGGAAACATTGTGTTCACGTGTATCA
GATACAGAAGTTCAGAGGACATAGTGAATATTGAATGCTGAAAGATAACATACCCAAGTGCGCC
AAAAGTCCCAAGGAAAGTGACAACGGCTGAATTCCTAGCTGCTAAAAGAGCCTGCTCATATCAA
ATGAGAATCCAAATTAGTTATGGAAGTATAATGAGTACTTATAAGAAAGAAAAGTTTCTGTTGA
CCAAATGGTAACATAACAAATTAGACGGAGTTTCTCTTCGATGAGGCACATGAAAGAATCATTT
CTATCATCATTTCATTCAGACAGTAATGTATCATCTTTATATAGCTTTTAAATGATAAATCCCC
TTACAGCAATAAAGAAGGTTTTGTCCCCAAGCTCAGAAAAGAATATCAACAAGAACGCCTGCGA
AAAATGAAGGAAAAGGAGGTTTAATTACTCTCTGGTGAAACACTTATCCTTCACAATCTCAAAT
AAAGTATAGTATGAGGAGAAAAAAAAAACAATACAGATGAAAATTTGTGCTATGTGTTCCTTGA
AGGAGAGTAAAGCAAGATACAAATGTCGGCAGATGATGCATGAAATGATTGCCATGTACTAGCT
AAAAGTACTGAGCTATTATCCTTGGCATTGTAATTTTGTTTTTTCTATTATTTTCTTTTTCAGA
CAAGGCAAAACAACAGAGAGATTTTTTAGAAATGGAAGCTGCTGAGAGATTTTCCTAACTGAAG
CAAAACCTGTGCTTAAATCTCCGAGGTCCCCGAAGAAAGGAAACGACTGCAAACCAGTAGCAAC
CTCTGAAGCAGCACTTGCTTGTTGAGTGAACAAAAGAGTGAAAAGCCCAGAAAGGACAATGGAT
TTCAGATAATTGTTCTCTGGCATGTCTAACACTTGAAGAACAGAAGTGCTTTGATTTTTCCTCT
TCGACAATGCTGTTTTGTTTGTTATACTGCATTCTTCGTCACAATAAGCCGACCTTGTCATGTG
GCATCTTTTGTAATTCCTAGTCCTGACCACCTGAGAGAATCCAGAATGTGGGATCATATATATT
CACAGTGAGACTTAAAGCTTTAAGTTCGAGATAATCAAATGACCAATGCATAAAAAAGCTCTCT
TATACTACAAGAATAAACTGAGTATTCGCAAGGAGCTAGTAGAAAGGATCTGATTTATAACTCA
CTGAATTTGATACAAATATGATTGTTAAAGTAGTAGGGGCATTAAATTTGGTCTAAAAACCATG
AGTTAATAGGAAGAAGCAGAATTTGGCTTATGAAATGCTTTCCAGGAATAATTTATGTACTTAG
TATATCACAATTCTTGTCGAAAAGCTTACATTATTTTTTTTTCACCCCTTACTCCGAAAAAATT
CACTTAACAAACATTTTTTTTTTACAGAATGAAGTACAAACAATTCAAATTGAAGAAAAGCAAA
AACCTTGGGGAAGTCCTCAGACCATCCATGTTGTTTGCAAAGAGAATGCCGCCTAGAAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.165957523
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yang et al., 2020