Splice junction sequence |
TTGCTTATCATTTCTTTCTTGAATTCAGTCATATGGTTACTACCTATCATACTGCTGGATGAAT GACAATACGACTAGAGATGCTCTTAAGATCAAGAAGtggctcaatgatcacccacgctaccgct cacataatttctatgttggtggagcctcatatgctggaaaggtggttccagttatcgtgcaata catttcag
|
Assembled circRNA sequence |
Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
|
Full-length trsnacripts |
Transcript length: 131 Transcript exons: 29872446-29872545,29874459-29874489 TGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTG GAAAGGTGGTTCCAGTTATCGTGCAATACATTTCAGTACGACTAGAGATGCTCTTAAGATCAAG AAG
Transcript length: 136 Transcript exons: 29872446-29872525,29874434-29874489 TGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTG GAAAGGTGGTTCCAGTTATCATACTGCTGGATGAATGACAATACGACTAGAGATGCTCTTAAGA TCAAGAAG
Transcript length: 144 Transcript exons: 29872446-29872545,29874446-29874489 TGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTG GAAAGGTGGTTCCAGTTATCGTGCAATACATTTCAGGGATGAATGACAATACGACTAGAGATGC TCTTAAGATCAAGAAG
Transcript length: 145 Transcript exons: 29872446-29872525,29874425-29874489 TGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTG GAAAGGTGGTTCCAGTGTTACTACCTATCATACTGCTGGATGAATGACAATACGACTAGAGATG CTCTTAAGATCAAGAAG
Transcript length: 164 Transcript exons: 29872446-29872540,29874421-29874489 TGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTG GAAAGGTGGTTCCAGTTATCGTGCAATACATTATGGTTACTACCTATCATACTGCTGGATGAAT GACAATACGACTAGAGATGCTCTTAAGATCAAGAAG
Transcript length: 165 Transcript exons: 29872446-29872545,29874425-29874489 TGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTG GAAAGGTGGTTCCAGTTATCGTGCAATACATTTCAGGTTACTACCTATCATACTGCTGGATGAA TGACAATACGACTAGAGATGCTCTTAAGATCAAGAAG
Transcript length: 169 Transcript exons: 29872446-29872548,29874424-29874489 TGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTG GAAAGGTGGTTCCAGTTATCGTGCAATACATTTCAGAAGGGTTACTACCTATCATACTGCTGGA TGAATGACAATACGACTAGAGATGCTCTTAAGATCAAGAAG
Transcript length: 558 Transcript exons: 29872446-29872548,29872824-29872862,29872952-29873061,29 873137-29873217,29873299-29873451,29874418-29874489 TGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTG GAAAGGTGGTTCCAGTTATCGTGCAATACATTTCAGAAGCAATTGAAGAACAAAGGCAACGACC ATTGATTGATCTTAAGTTACAGGGATATATAGTTGGCAACCCCATAACAGGTTCGAAATTCGAT AAAAATTTCCATGTTCCCTATTCTCATGGCGTTGGAATTATATCTGATCAATTATATGAGGCTG CGGTAACGCATTGCAAAGGAGATTTTGTGAACCCAACAAACCAATTGTGTGCTAACGTCGTATA TACTATTAATAAACTCATGTCTGAAGTTTCGGATGGAAATATCTTGGAGGATAAATGTGTTAAA GCTGCACCAAAACCTACAATAGATGTTTCAGCAAGCAGGGCACTGCTGGAAGAATACAGCCGGC TAAGCAAGCCACCTATTCGACCTTCTATGGATTGCGCTTCATATGGTTACTACCTATCATACTG CTGGATGAATGACAATACGACTAGAGATGCTCTTAAGATCAAGAAG
|
Genomic sequence |
TGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTG GAAAGGTGGTTCCAGTTATCGTGCAATACATTTCAGAAGGTAATCAACGATACACTTAACATAC TATAAAACGAATTAGATGATAATCTAATTTGCAGTTATAACCATATGTTTTAGAACCTTTGTTG TGTTCTTTCAAATATGTACAAAATTGTTAAAAGTTTCAAACTAATCTCAGAAGTCAAATAATGC CGCACGGGAGTGACAAATCCCACCATATTTTTAACTGTTCAACTTGTTCACATGCCAATAATGA TTGTGGTACTCTTTTTAGCTAGTCTCTTACCTTGTCTTAATTTCTTCCTACTCACCAGCAATTG AAGAACAAAGGCAACGACCATTGATTGATCTTAAGGCATGCCATTTTTATCTCTCAAACAGTTT ATAAAAATTTCGATAATGCAGCATCATGTCTCTTACTATTTCTTGTAAATACAAAATCAGTTAC AGGGATATATAGTTGGCAACCCCATAACAGGTTCGAAATTCGATAAAAATTTCCATGTTCCCTA TTCTCATGGCGTTGGAATTATATCTGATCAATTATATGAGGTAACATCAAATCCATACACTCAA TTTGAGTGGGGTGATACTATTGCATAACATTTTCCTATTCCTCTTTTGAAGGCTGCGGTAACGC ATTGCAAAGGAGATTTTGTGAACCCAACAAACCAATTGTGTGCTAACGTCGTATATACTATTAA TAAAGTAAGATTATTGCACTGTACTAATTTGTATGTTTACTAATATTCATCTAGTATTATCTTA CTGCACAAATCCCATGTGTAGCTCATGTCTGAAGTTTCGGATGGAAATATCTTGGAGGATAAAT GTGTTAAAGCTGCACCAAAACCTACAATAGATGTTTCAGCAAGCAGGGCACTGCTGGAAGAATA CAGCCGGCTAAGCAAGCCACCTATTCGACCTTCTATGGATTGCGCTGTAAGTCCTTACTATCCA TGGGTCCATTGTGTTAATTTGATTGAAGAATGTAGAATTTTCTAAGAAATAGATTTGAGTTTTG ATCTCGCTAACACCTAGCCTAAACAAGATCACCAATTCTATTGTGGAATAAAGTGATAGAACTG ATCACGGTTAGATAAAGCCATGAATGTCATATGGTCACAATCATTTTCATCTACTCTGCTGTTG GTGTAGGCGAGGCAGGAGACTGGCTTGATGCCAAAGGCGTCGGTGTCTCACTGTAGATGGCTAT GGGCATCGTTGTCCTTTTTAACCCACCTTCTCCAATGGCCTTGATCGGTCCTTTGGGTCCCTTC CAGTGCCTCTAAGGATCGAAGGATAGGTTTAGGATTTTTGGTGGAGGACTAAGGCTGTGTTCTT AGGTGCTCACCTCTAACACGGAAAACGGAGCAATGGATTAATGCGTGATTAATTAATTGTTAGC TTAAAAACTTCAAAAATGGATTAATATGATTTTTTAAAAAAACTTTTCTATATAATTTTTTTTT GCAAAACACGCACCGTTTAGTAGTTTGAATAGTGTGCGCGCAATAAACCAGAGAATGAGGTTGG AAACTTAGACTTAAGAACACAACCTAAGGGTACGAGAGATCGTCGTTCATTATACGAGGCCATT CCCTTCTTCAGATATGACATTGGCGGGACTCAGCCTGTCAAATAGAAAGCACAAGCATCTCCAA TCATGGTGTAGTCCCTTTAGGAAGGTGTGAGAGACGTGCAGGGTAGACCATGTCCTCTCAAGAC TCTGCCCCTGTCGTAGGAGCGTGTGTTCGTAGGTGGATCAGGCCCTTCATGCAGGTCATGGCTT GGTTAGCCAAGATAAACTGATATTAGACGTAAGATTGTGTAGATACATTACATTGCAGTGTTCA CCTTCCTCTTTTTGTAATGTTAATTTGCTTATCATTTCTTTCTTGAATTCAGTCATATGGTTAC TACCTATCATACTGCTGGATGAATGACAATACGACTAGAGATGCTCTTAAGATCAAGAAG |