Detail information of Os03g0730500_circ_g.1


General Information
CircRNA Name Os03g0730500_circ_g.1
ID in PlantcircBase osa_circ_021635
Alias Os03circ25235
Organism Oryza sativa
Position chr3: 29872446-29874489  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, CIRI, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, find_circ
Parent gene Os03g0730500
Parent gene annotation Peptidase S10, serine carboxypeptidase family protein. (Os03t073
0500-01);Peptidase S10, serine carboxypeptidase family protein.
(Os03t0730500-02)
Parent gene strand +
Alternative splicing Os03g0730433_circ_ag.1 Os03g0730400_circ_g.2 Os03g0730400_circ_g.3 Os03g0730433_circ_ag.4
Support reads 3/40
Tissues leaf and panicle/shoot, root, seed, pistil
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0730500-01:6
Os03t0730500-02:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGCTTATCATTTCTTTCTTGAATTCAGTCATATGGTTACTACCTATCATACTGCTGGATGAAT
GACAATACGACTAGAGATGCTCTTAAGATCAAGAAGtggctcaatgatcacccacgctaccgct
cacataatttctatgttggtggagcctcatatgctggaaaggtggttccagttatcgtgcaata
catttcag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 131
Transcript exons: 29872446-29872545,29874459-29874489
TGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTG
GAAAGGTGGTTCCAGTTATCGTGCAATACATTTCAGTACGACTAGAGATGCTCTTAAGATCAAG
AAG

Transcript length: 136
Transcript exons: 29872446-29872525,29874434-29874489
TGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTG
GAAAGGTGGTTCCAGTTATCATACTGCTGGATGAATGACAATACGACTAGAGATGCTCTTAAGA
TCAAGAAG

Transcript length: 144
Transcript exons: 29872446-29872545,29874446-29874489
TGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTG
GAAAGGTGGTTCCAGTTATCGTGCAATACATTTCAGGGATGAATGACAATACGACTAGAGATGC
TCTTAAGATCAAGAAG

Transcript length: 145
Transcript exons: 29872446-29872525,29874425-29874489
TGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTG
GAAAGGTGGTTCCAGTGTTACTACCTATCATACTGCTGGATGAATGACAATACGACTAGAGATG
CTCTTAAGATCAAGAAG

Transcript length: 164
Transcript exons: 29872446-29872540,29874421-29874489
TGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTG
GAAAGGTGGTTCCAGTTATCGTGCAATACATTATGGTTACTACCTATCATACTGCTGGATGAAT
GACAATACGACTAGAGATGCTCTTAAGATCAAGAAG

Transcript length: 165
Transcript exons: 29872446-29872545,29874425-29874489
TGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTG
GAAAGGTGGTTCCAGTTATCGTGCAATACATTTCAGGTTACTACCTATCATACTGCTGGATGAA
TGACAATACGACTAGAGATGCTCTTAAGATCAAGAAG

Transcript length: 169
Transcript exons: 29872446-29872548,29874424-29874489
TGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTG
GAAAGGTGGTTCCAGTTATCGTGCAATACATTTCAGAAGGGTTACTACCTATCATACTGCTGGA
TGAATGACAATACGACTAGAGATGCTCTTAAGATCAAGAAG

Transcript length: 558
Transcript exons: 29872446-29872548,29872824-29872862,29872952-29873061,29
873137-29873217,29873299-29873451,29874418-29874489
TGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTG
GAAAGGTGGTTCCAGTTATCGTGCAATACATTTCAGAAGCAATTGAAGAACAAAGGCAACGACC
ATTGATTGATCTTAAGTTACAGGGATATATAGTTGGCAACCCCATAACAGGTTCGAAATTCGAT
AAAAATTTCCATGTTCCCTATTCTCATGGCGTTGGAATTATATCTGATCAATTATATGAGGCTG
CGGTAACGCATTGCAAAGGAGATTTTGTGAACCCAACAAACCAATTGTGTGCTAACGTCGTATA
TACTATTAATAAACTCATGTCTGAAGTTTCGGATGGAAATATCTTGGAGGATAAATGTGTTAAA
GCTGCACCAAAACCTACAATAGATGTTTCAGCAAGCAGGGCACTGCTGGAAGAATACAGCCGGC
TAAGCAAGCCACCTATTCGACCTTCTATGGATTGCGCTTCATATGGTTACTACCTATCATACTG
CTGGATGAATGACAATACGACTAGAGATGCTCTTAAGATCAAGAAG

Genomic sequence TGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTG
GAAAGGTGGTTCCAGTTATCGTGCAATACATTTCAGAAGGTAATCAACGATACACTTAACATAC
TATAAAACGAATTAGATGATAATCTAATTTGCAGTTATAACCATATGTTTTAGAACCTTTGTTG
TGTTCTTTCAAATATGTACAAAATTGTTAAAAGTTTCAAACTAATCTCAGAAGTCAAATAATGC
CGCACGGGAGTGACAAATCCCACCATATTTTTAACTGTTCAACTTGTTCACATGCCAATAATGA
TTGTGGTACTCTTTTTAGCTAGTCTCTTACCTTGTCTTAATTTCTTCCTACTCACCAGCAATTG
AAGAACAAAGGCAACGACCATTGATTGATCTTAAGGCATGCCATTTTTATCTCTCAAACAGTTT
ATAAAAATTTCGATAATGCAGCATCATGTCTCTTACTATTTCTTGTAAATACAAAATCAGTTAC
AGGGATATATAGTTGGCAACCCCATAACAGGTTCGAAATTCGATAAAAATTTCCATGTTCCCTA
TTCTCATGGCGTTGGAATTATATCTGATCAATTATATGAGGTAACATCAAATCCATACACTCAA
TTTGAGTGGGGTGATACTATTGCATAACATTTTCCTATTCCTCTTTTGAAGGCTGCGGTAACGC
ATTGCAAAGGAGATTTTGTGAACCCAACAAACCAATTGTGTGCTAACGTCGTATATACTATTAA
TAAAGTAAGATTATTGCACTGTACTAATTTGTATGTTTACTAATATTCATCTAGTATTATCTTA
CTGCACAAATCCCATGTGTAGCTCATGTCTGAAGTTTCGGATGGAAATATCTTGGAGGATAAAT
GTGTTAAAGCTGCACCAAAACCTACAATAGATGTTTCAGCAAGCAGGGCACTGCTGGAAGAATA
CAGCCGGCTAAGCAAGCCACCTATTCGACCTTCTATGGATTGCGCTGTAAGTCCTTACTATCCA
TGGGTCCATTGTGTTAATTTGATTGAAGAATGTAGAATTTTCTAAGAAATAGATTTGAGTTTTG
ATCTCGCTAACACCTAGCCTAAACAAGATCACCAATTCTATTGTGGAATAAAGTGATAGAACTG
ATCACGGTTAGATAAAGCCATGAATGTCATATGGTCACAATCATTTTCATCTACTCTGCTGTTG
GTGTAGGCGAGGCAGGAGACTGGCTTGATGCCAAAGGCGTCGGTGTCTCACTGTAGATGGCTAT
GGGCATCGTTGTCCTTTTTAACCCACCTTCTCCAATGGCCTTGATCGGTCCTTTGGGTCCCTTC
CAGTGCCTCTAAGGATCGAAGGATAGGTTTAGGATTTTTGGTGGAGGACTAAGGCTGTGTTCTT
AGGTGCTCACCTCTAACACGGAAAACGGAGCAATGGATTAATGCGTGATTAATTAATTGTTAGC
TTAAAAACTTCAAAAATGGATTAATATGATTTTTTAAAAAAACTTTTCTATATAATTTTTTTTT
GCAAAACACGCACCGTTTAGTAGTTTGAATAGTGTGCGCGCAATAAACCAGAGAATGAGGTTGG
AAACTTAGACTTAAGAACACAACCTAAGGGTACGAGAGATCGTCGTTCATTATACGAGGCCATT
CCCTTCTTCAGATATGACATTGGCGGGACTCAGCCTGTCAAATAGAAAGCACAAGCATCTCCAA
TCATGGTGTAGTCCCTTTAGGAAGGTGTGAGAGACGTGCAGGGTAGACCATGTCCTCTCAAGAC
TCTGCCCCTGTCGTAGGAGCGTGTGTTCGTAGGTGGATCAGGCCCTTCATGCAGGTCATGGCTT
GGTTAGCCAAGATAAACTGATATTAGACGTAAGATTGTGTAGATACATTACATTGCAGTGTTCA
CCTTCCTCTTTTTGTAATGTTAATTTGCTTATCATTTCTTTCTTGAATTCAGTCATATGGTTAC
TACCTATCATACTGCTGGATGAATGACAATACGACTAGAGATGCTCTTAAGATCAAGAAG
Conservation Information
Conserved circRNAs osi_circ_013583
PMCS 0.524003733
Functional Information
Coding potential Y
Potential coding position 29873303-29874486(+)
29874453-29872850(+)
Potential amino acid sequence MSEVSDGNILEDKCVKAAPKPTIDVSASRALLEEYSRLSKPPIRPSMDCASYGYYLSYCWMNDN
TTRDALKIKKWLNDHPRYRSHNFYVGGASYAGKVVPVIVQYISEAIEEQRQRPLIDLKLQGYIV
GNPITGSKFDKNFHVPYSHGVGIISDQLYEAAVTHCKGDFVNPTNQLCANVVYTINKLMSEVSD
GNILEDKCVKAAPKPTIDVSASRALLEEYSRLSKPPIRPSMDCASYGYYLSYCWMNDNTTRDAL
KIKKWLNDHPRYRSHNFYVGGASYAGKVVPVIVQYISEAIEEQRQRPLIDLKLQGYIVGNPITG
SKFDKNFHVPYSHGVGIISDQLYEAAVTHCKGDFVNPTNQLCANVVYTINKLMSEVSDGNILED
KCVKAAPKPTIDVSASRALLEEYSRLSKPPIRPSMDCASYGYYLSYCWMNDNTTRDALKIKKWL
NDHPRYRSHNFYVGGASYAGKVVPVIVQYISEAIEEQRQRPLIDLKLQGYIVGNPITGSKFDKN
FHVPYSHGVGIISDQLYEAAVTHCKGDFVNPTNQLCANVVYTINKLMSEVSDGNILEDKCVKAA
PKPTIDVSASRALLEEYSRLSKPPIRPSMDCASYGYYLSYCWMNDNTTRDALKIKK(+)
MTIRLEMLLRSRSGSMITHATAHIISMLVEPHMLERWFQLSCNTFQKQLKNKGNDH*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017