Detail information of BGIOSGA016877_circ_g.5


General Information
CircRNA Name BGIOSGA016877_circ_g.5
ID in PlantcircBase osi_circ_014618
Alias Chr04:28035588_28035954(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26252774-26253140  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016877
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-TA
Number of exons covered BGIOSGA016877-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGCTGTTACTTCTTCTAGGTCAATCTACACTGTAGGCTCTCTTATAAACGTGCTCGGGTCAAA
AGCATTACCTCAGCTTCCATTGATCATGAAAAATATgcttgatccagaagaagcaaaagaaagc
tagaaaattaaatcatagcactcctgctactgcacttcaagtggacaagagctctgccccttgt
ttcagtga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTTGATCCAGAAGAAGCAAAAGAAAGCTAGAAAATTAAATCATAGCACTCCTGCTACTGCACT
TCAAGTGGACAAGAGCTCTGCCCCTTGTTTCAGTGAGTTGTGCGTTAAGATTCTAGAGTTGGTT
GACAGAGAGGTTGATTCAGACAGTTCAGTGAGAATTGCAGCTATTTCTTCACTTGAAACACTGG
CAAAAGAATATCCCTCTGATAATCCTGCATATAGGAAGTGCCTTGCAAAAATCACTAATCACAT
CAACTCTGGTGATGCTGTTACTTCTTCTAGGTCAATCTACACTGTAGGCTCTCTTATAAACGTG
CTCGGGTCAAAAGCATTACCTCAGCTTCCATTGATCATGAAAAATAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2095-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021