Plant Circular RNA Database

Detail information of Os05g0596600_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os05g0596600_circ_g.1
					
						ID in PlantcircBase
						osa_circ_029247
					
						Alias
						Os_ciR10182
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 29729047-29731062  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os05g0596600						
					
						Parent gene annotation
						
							Similar to SMC5 protein. (Os05t0596600-01);Similar to SMC5 prote
in. (Os05t0596600-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						2/1
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0596600-02:7

General Information
CircRNA Name	Os05g0596600_circ_g.1
ID in PlantcircBase	osa_circ_029247
Alias	Os_ciR10182
Organism	Oryza sativa
Position	chr5: 29729047-29731062 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os05g0596600
Parent gene annotation	Similar to SMC5 protein. (Os05t0596600-01);Similar to SMC5 prote in. (Os05t0596600-02)
Parent gene strand	-
Alternative splicing	NA
Support reads	2/1
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0596600-02:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GACAATATGAAAATGTCCAGACCTTTGTAGCCTCTATATCAGAGTAGCATCTTTCACATTCTCC
TTTATCATCTTCCAGCTTTATGGATATTGATTCTATctttagctggcttctcaatccatgggcc
attcatgatatttaggatgctgcatgcatcactatattccaaatcaggcagcaacttgggcgtc
aggaggaa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 547
Transcript exons: 29729047-29729150,29729233-29729304,29729413-29729501,29
729576-29729624,29730644-29730698,29730788-29730887,2973
0985-29731062
CTTTAGCTGGCTTCTCAATCCATGGGCCATTCATGATATTTAGGATGCTGCATGCATCACTATA
TTCCAAATCAGGCAGCAACTTGGGCGTCAGGAGGAAGCACTGTGGAGTGTTTGGCTGACTGGCT
GCTCTCACAAGCTGCTGGAACATCTTCCTCTCGTTTATGGGATCCATTCCTTGATTTATCTCAT
CAACGACCCGAAAGGGGCAGTTGGTAAGATCTTGAAGTGATACAAGGTACAGGATGGTTGAAAC
TGATCGCTCCCCTCCAGATTGGTGATGAGCGCTCAACACCTGCAACTGACCTGTTTGCCTAAAC
TTGACCTTTATAAGGATGCCATATTGCTCAAAATCAAGACCATGTTCATCAAGTGAAACTTCTC
CAGCAACAGCCATTTCTTGAAAGTTACGACTAAACGTGCTGTTTATTTTTGAAACAAGAGTGCG
CAGAGTTGGAAGCCATTTGCCCTTTGTAGCCTCTATATCAGAGTAGCATCTTTCACATTCTCCT
TTATCATCTTCCAGCTTTATGGATATTGATTCTAT
						
					

						Genomic sequence
						
							CTTTAGCTGGCTTCTCAATCCATGGGCCATTCATGATATTTAGGATGCTGCATGCATCACTATA
TTCCAAATCAGGCAGCAACTTGGGCGTCAGGAGGAAGCACCTATAGCCAGATTAAGAAACATGG
GAGTTGGTAGATGCTATCTGAAAATGCCTCCTGAAATGCTAAGAGTACTGTCACAAACTGTGGA
GTGTTTGGCTGACTGGCTGCTCTCACAAGCTGCTGGAACATCTTCCTCTCGTTTATGGGATCCA
TTCCTGCAATTTCGGGGAAACAGTTACCTTTGTAATGCTTCAACAAACTAGTAATCATTTTATA
ACAGCATTGAGTGCATAGGGAACAAAAACTTGTGAGGGTTGGCTTGCCTTGATTTATCTCATCA
ACGACCCGAAAGGGGCAGTTGGTAAGATCTTGAAGTGATACAAGGTACAGGATGGTTGAAACTG
ATCGCTCCTATAAAGGAGCAAAAAATAATAGTAAGTATAAGGCATATTTTTCTAGAATGCATCT
AATAGTTTTTTTCATACCCCTCCAGATTGGTGATGAGCGCTCAACACCTGCAACTGACCTGTTT
GCCTGAGGAAAATAATGCCACAATTTGATTAAAAACCACAAAATAAGGCCAACAGAAACCTTGT
GGAAACCCTTAAACTACAGGCTACAGTAGAAGCAGGCTGAACTATGGAATTAAACACTGCGGGA
TGAACATGGCTAGAAACAGGCAACAAAAGACGGGTTACAGGACCATCCAAATAGCACCTTTAAT
GATAAAATAATCGGTAACGCCATTCTAATCTTGAGTAGATGTTAAATGCTCCCTCGGTTCCATA
TTGTAATATGTTTTAAGTTTGTCAAAGTTTGACCAAGTTCATAGAAAAATGTATCTACGTTTCT
GACACAAAACAAATATATTACAAAAGTATATTCGGTGGTGGATTTAATGAAACCAATTTGCTGT
TGTAGATGTTGCTACGTTTTTTTTATAAACTTAGTCAAAGTTTGACATAGGATGAAACCTAAAA
CATCTTACAATATGGAACAAAGGGAGTAGAACATAATAGTCACAGATAAATAGCAAATAAAAGA
TCTCATGATTGAAGTATGGAGTTACAAATAAGAACACCTGGCTAATGACTAAGATCTCTCCCAT
GTTAGAAGACAACAGAGCTATTCTCGTGAAAGTAATAGTTCAAGTGCTACTGGCATGAGGTATC
ACTAGAAGTCTAAGAAAGATAGAATCCACAGAAAACAAAAGATCTGAGAGCACATCGGAATTCA
ATACAAATGAACAGAGTGTTTTATACTTCACCTTTTATCCTTCTTAACATATACATTTGATGAT
CACTTATCATCATATAATGTATGAGTGCAACCTAGAAATAATCAAGTTACCCTATACTATAACT
CAGTGATTTGTAAGACTGTTCTCTGCTTACTGGTCATATCTGTTTAACCACGGATAGCAGTCCC
TAGTTTGGTTGCCATCAGGAAATAGTACCACTACTCCATCAGTGATGGACAAGTAGTGTACTTA
TCATTATTTACTTAATTGCAAGAAATCAGAGCAGTGCTCTCAATTAGGAAAAGAAACTCACCTA
AACTTGACCTTTATAAGGATGCCATATTGCTCAAAATCAAGACCATGTTCATCTGCAGGAAATT
TGGTACAGATTGGTATGCCATCTGAAAATAGTACAAATAACAGTGTGATAACACAAAAAAGGAA
CTGCCACACATACCAAGTGAAACTTCTCCAGCAACAGCCATTTCTTGAAAGTTACGACTAAACG
TGCTGTTTATTTTTGAAACAAGAGTGCGCAGAGTTGGAAGCCATTTGCCCTAGGATATTGCCAA
AGTCAAGTCAAGTGAGGCAGGATGCCAAAAAAGATTTGGACAAAGTATGGTAATATAGCTGACA
ATATGAAAATGTCCAGACCTTTGTAGCCTCTATATCAGAGTAGCATCTTTCACATTCTCCTTTA
TCATCTTCCAGCTTTATGGATATTGATTCTAT
						
					

			
		

Sequences
Splice junction sequence	GACAATATGAAAATGTCCAGACCTTTGTAGCCTCTATATCAGAGTAGCATCTTTCACATTCTCC TTTATCATCTTCCAGCTTTATGGATATTGATTCTATctttagctggcttctcaatccatgggcc attcatgatatttaggatgctgcatgcatcactatattccaaatcaggcagcaacttgggcgtc aggaggaa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 547 Transcript exons: 29729047-29729150,29729233-29729304,29729413-29729501,29 729576-29729624,29730644-29730698,29730788-29730887,2973 0985-29731062 CTTTAGCTGGCTTCTCAATCCATGGGCCATTCATGATATTTAGGATGCTGCATGCATCACTATA TTCCAAATCAGGCAGCAACTTGGGCGTCAGGAGGAAGCACTGTGGAGTGTTTGGCTGACTGGCT GCTCTCACAAGCTGCTGGAACATCTTCCTCTCGTTTATGGGATCCATTCCTTGATTTATCTCAT CAACGACCCGAAAGGGGCAGTTGGTAAGATCTTGAAGTGATACAAGGTACAGGATGGTTGAAAC TGATCGCTCCCCTCCAGATTGGTGATGAGCGCTCAACACCTGCAACTGACCTGTTTGCCTAAAC TTGACCTTTATAAGGATGCCATATTGCTCAAAATCAAGACCATGTTCATCAAGTGAAACTTCTC CAGCAACAGCCATTTCTTGAAAGTTACGACTAAACGTGCTGTTTATTTTTGAAACAAGAGTGCG CAGAGTTGGAAGCCATTTGCCCTTTGTAGCCTCTATATCAGAGTAGCATCTTTCACATTCTCCT TTATCATCTTCCAGCTTTATGGATATTGATTCTAT
Genomic sequence	CTTTAGCTGGCTTCTCAATCCATGGGCCATTCATGATATTTAGGATGCTGCATGCATCACTATA TTCCAAATCAGGCAGCAACTTGGGCGTCAGGAGGAAGCACCTATAGCCAGATTAAGAAACATGG GAGTTGGTAGATGCTATCTGAAAATGCCTCCTGAAATGCTAAGAGTACTGTCACAAACTGTGGA GTGTTTGGCTGACTGGCTGCTCTCACAAGCTGCTGGAACATCTTCCTCTCGTTTATGGGATCCA TTCCTGCAATTTCGGGGAAACAGTTACCTTTGTAATGCTTCAACAAACTAGTAATCATTTTATA ACAGCATTGAGTGCATAGGGAACAAAAACTTGTGAGGGTTGGCTTGCCTTGATTTATCTCATCA ACGACCCGAAAGGGGCAGTTGGTAAGATCTTGAAGTGATACAAGGTACAGGATGGTTGAAACTG ATCGCTCCTATAAAGGAGCAAAAAATAATAGTAAGTATAAGGCATATTTTTCTAGAATGCATCT AATAGTTTTTTTCATACCCCTCCAGATTGGTGATGAGCGCTCAACACCTGCAACTGACCTGTTT GCCTGAGGAAAATAATGCCACAATTTGATTAAAAACCACAAAATAAGGCCAACAGAAACCTTGT GGAAACCCTTAAACTACAGGCTACAGTAGAAGCAGGCTGAACTATGGAATTAAACACTGCGGGA TGAACATGGCTAGAAACAGGCAACAAAAGACGGGTTACAGGACCATCCAAATAGCACCTTTAAT GATAAAATAATCGGTAACGCCATTCTAATCTTGAGTAGATGTTAAATGCTCCCTCGGTTCCATA TTGTAATATGTTTTAAGTTTGTCAAAGTTTGACCAAGTTCATAGAAAAATGTATCTACGTTTCT GACACAAAACAAATATATTACAAAAGTATATTCGGTGGTGGATTTAATGAAACCAATTTGCTGT TGTAGATGTTGCTACGTTTTTTTTATAAACTTAGTCAAAGTTTGACATAGGATGAAACCTAAAA CATCTTACAATATGGAACAAAGGGAGTAGAACATAATAGTCACAGATAAATAGCAAATAAAAGA TCTCATGATTGAAGTATGGAGTTACAAATAAGAACACCTGGCTAATGACTAAGATCTCTCCCAT GTTAGAAGACAACAGAGCTATTCTCGTGAAAGTAATAGTTCAAGTGCTACTGGCATGAGGTATC ACTAGAAGTCTAAGAAAGATAGAATCCACAGAAAACAAAAGATCTGAGAGCACATCGGAATTCA ATACAAATGAACAGAGTGTTTTATACTTCACCTTTTATCCTTCTTAACATATACATTTGATGAT CACTTATCATCATATAATGTATGAGTGCAACCTAGAAATAATCAAGTTACCCTATACTATAACT CAGTGATTTGTAAGACTGTTCTCTGCTTACTGGTCATATCTGTTTAACCACGGATAGCAGTCCC TAGTTTGGTTGCCATCAGGAAATAGTACCACTACTCCATCAGTGATGGACAAGTAGTGTACTTA TCATTATTTACTTAATTGCAAGAAATCAGAGCAGTGCTCTCAATTAGGAAAAGAAACTCACCTA AACTTGACCTTTATAAGGATGCCATATTGCTCAAAATCAAGACCATGTTCATCTGCAGGAAATT TGGTACAGATTGGTATGCCATCTGAAAATAGTACAAATAACAGTGTGATAACACAAAAAAGGAA CTGCCACACATACCAAGTGAAACTTCTCCAGCAACAGCCATTTCTTGAAAGTTACGACTAAACG TGCTGTTTATTTTTGAAACAAGAGTGCGCAGAGTTGGAAGCCATTTGCCCTAGGATATTGCCAA AGTCAAGTCAAGTGAGGCAGGATGCCAAAAAAGATTTGGACAAAGTATGGTAATATAGCTGACA ATATGAAAATGTCCAGACCTTTGTAGCCTCTATATCAGAGTAGCATCTTTCACATTCTCCTTTA TCATCTTCCAGCTTTATGGATATTGATTCTAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_015885 						
					
						PMCS
						0.334597615

Conservation Information
Conserved circRNAs	osi_circ_015885
PMCS	0.334597615

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							29730817-29731033(-)
29729078-29731033(-)
						
						Potential amino acid sequence
						
							MAVAGEVSLDEHGLDFEQYGILIKVKFRQTGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCP
FRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSDACSILNIMNGPWIE
KPAKDRINIHKAGR*(-)
MAHGLRSQLKIESISIKLEDDKGECERCYSDIEATKGKWLPTLRTLVSKINSTFSRNFQEMAVA
GEVSLDEHGLDFEQYGILIKVKFRQTGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVV
DEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSDACSILNIMNGPWIEKPAK
DRINIHKAGR*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	29730817-29731033(-) 29729078-29731033(-)
Potential amino acid sequence	MAVAGEVSLDEHGLDFEQYGILIKVKFRQTGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCP FRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSDACSILNIMNGPWIE KPAKDRINIHKAGR(-) MAHGLRSQLKIESISIKLEDDKGECERCYSDIEATKGKWLPTLRTLVSKINSTFSRNFQEMAVA GEVSLDEHGLDFEQYGILIKVKFRQTGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVV DEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSDACSILNIMNGPWIEKPAK DRINIHKAGR(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os05g0596600_circ_g.1

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