Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT3G19960_circ_g.2 |
ID in PlantcircBase | ath_circ_022834 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr3: 6950263-6953030 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT3G19960 |
Parent gene annotation |
Myosin 1 |
Parent gene strand | + |
Alternative splicing | AT3G19960_circ_g.1 AT3G19960_circ_g.3 AT3G19960_circ_g.4 AT3G19960_circ_g.5 AT3G19960_circ_g.6 AT3G19960_circ_g.7 AT3G19960_circ_g.8 AT3G19960_circ_g.9 AT3G19960_circ_g.10 AT3G19960_circ_g.11 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT3G19960.5:11 AT3G19960.4:11 AT3G19960.1:11 AT3G19960.3:11 AT3G19960.2:13 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.135522082 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6950516-6953027(+) |
Potential amino acid sequence |
MQLSYLNEPSVLYNLNYRYNQDMIYTKAGPVLVAVNPFKEVPLYGNRYIEAYRKKSNESPHVYA IADTAIREMIRDEVNQSIIIRCICIHESMTYSISSSSGESGAGKTETAKIAMQYLAALGGGSGI EYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSESGKISGAQIQTFLLEKSRVVQCAEGE RSYHIFYQLCAGASPALREKLNLTSAHEYKYLGQSNCYSINGVDDAERFHTVKEALDIVHVSKE DQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADESFLFHSLGSWCWKQECLLHNMCLSTVAKL IGCNINELTLTLSKRNMRVRNDTIVQKLTLPQILQSWIQLPNGNWELGKILSTSGEESVISLPE GKVIKVISETLVPANPDILDGVDDLMQLSYLNEPSVLYNLNYRYNQDMIYTKAGPVLVAVNPFK EVPLYGNRYIEAYRKKSNESPHVYAIADTAIREMIRDEVNQSIIIRCICIHESMTYSISSSSGE SGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSES GKISGAQIQTFLLEKSRVVQCAEGERSYHIFYQLCAGASPALREKLNLTSAHEYKYLGQSNCYS INGVDDAERFHTVKEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADESFLF HSLGSWCWKQECLLHNMCLSTVAKLIGCNINELTLTLSKRNMRVRNDTIVQKLTLPQILQSWIQ LPNGNWELGKILSTSGEESVISLPEGKVIKVISETLVPANPDILDGVDDLMQLSYLNEPSVLYN LNYRYNQDMIYTKAGPVLVAVNPFKEVPLYGNRYIEAYRKKSNESPHVYAIADTAIREMIRDEV NQSIIIRCICIHESMTYSISSSSGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAF GNAKTLRNDNSSRFGKLIEIHFSESGKISGAQIQTFLLEKSRVVQCAEGERSYHIFYQLCAGAS PALREKLNLTSAHEYKYLGQSNCYSINGVDDAERFHTVKEALDIVHVSKEDQESVFAMLAAVLW LGNVSFTVIDNENHVEPVADESFLFHSLGSWCWKQECLLHNMCLSTVAKLIGCNINELTLTLSK RNMRVRNDTIVQKLTLPQILQSWIQLPNGNWELGKILSTSGEESVISLPEGKVIKVISETLVPA NPDILDGVDDLMQLSYLNEPSVLYNLNYRYNQDMIYTKAGPVLVAVNPFKEVPLYGNRYIEAYR KKSNESPHVYAIADTAIREMIRDEVNQSIIIRCICIHESMTYSISSSSGESGAGKTETAKIAMQ YLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSESGKISGAQIQTFLLE KSRVVQCAEGERSYHIFYQLCAGASPALREKLNLTSAHEYKYLGQSNCYSINGVDDAERFHTVK EALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADESFLFHSLGSWCWKQECLL HNMCLSTVAKLIGCNINELTLTLSKRNMRVRNDTIVQKLTLPQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |