Detail information of AT3G19960_circ_g.2


General Information
CircRNA Name AT3G19960_circ_g.2
ID in PlantcircBase ath_circ_022834
Alias NA
Organism Arabidpsis thaliana
Position chr3: 6950263-6953030  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT3G19960
Parent gene annotation Myosin 1
Parent gene strand +
Alternative splicing AT3G19960_circ_g.1 AT3G19960_circ_g.3 AT3G19960_circ_g.4 AT3G19960_circ_g.5 AT3G19960_circ_g.6 AT3G19960_circ_g.7 AT3G19960_circ_g.8 AT3G19960_circ_g.9 AT3G19960_circ_g.10 AT3G19960_circ_g.11
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G19960.5:11
AT3G19960.4:11
AT3G19960.1:11
AT3G19960.3:11
AT3G19960.2:13
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTGATTGGGTGCAACATCAATGAGCTTACGCTAACTTTATCGAAACGTAACATGAGAGTTAGG
AATGATACCATTGTACAGAAGCTAACGCTACCACAGatactgcaatcttggattcaacttccaa
atggtaactgggagcttgggaagatattgtcaacttcaggggaggagtctgttatatctttgcc
cgaaggaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATACTGCAATCTTGGATTCAACTTCCAAATGGTAACTGGGAGCTTGGGAAGATATTGTCAACTT
CAGGGGAGGAGTCTGTTATATCTTTGCCCGAAGGAAAAGTAAGTAACTTTTTGTATTTCTAAGG
TAGCCAGGTTAATTTTTGAAGTATTTGATCTGAAACTACTTTCAAACTTGAAACAGGTTATAAA
AGTCATATCAGAGACTCTAGTACCTGCAAATCCTGATATTCTTGATGGAGTGGACGATCTTATG
CAGCTTAGTTACTTAAATGAGCCATCAGTGTTGTACAACCTCAACTATAGGTACAACCAAGACA
TGATATATGTAAGTCTTTTGTTGTGATATTTTTTTTTGCTCATCAGGATAATAGTCTTTCCCCT
GAATCTGTTACTATATATGTTCCAGCATCTACTCTTGCTTGGCTAACCTTTTTCCTTTATGGTG
CTAGACAAAAGCAGGGCCAGTTTTGGTGGCTGTGAATCCTTTTAAGGAGGTTCCTTTATACGGA
AATCGATACATTGAAGCATACAGGAAGAAATCAAATGAGAGTCCTCATGTGTATGCAATTGCAG
ATACAGCAATTCGCGAAATGATACGCGGTGGGTTCATGTTTCATTCTTTTGTTAATTGTTGAAC
GTTAACATTGCAATTCTCATAAGCTGAAAAAAATATTTCAATTCTCTCACTATTTTATCTTTTC
CAATCCAGATGAAGTTAACCAATCTATCATTATCAGGTTAGTAGAACTGTCCTCTTTTATGCTT
AGTTTTTGCTAATTTTCATGCCTATTGGATTTCAAATGGCACTAGCATGAGAATACTTGTTTTT
GGACTAAAGATGTATTTGTATTCATGAGTCCATGACCTGTAAAGTTGCATTAGTTGTGAGACAC
TGAGACTAGTGGATCTGTTGAATAAAGTGGTGCTTCCAGTTTGTGTATTTTGTGGTGTATCCTT
ATCACAAGATTCTATTTCTTCTTCCAGCGGCGAGAGTGGAGCAGGGAAAACTGAGACTGCTAAA
ATAGCTATGCAATACTTGGCTGCTCTTGGAGGCGGAAGCGGGATCGAATATGAGATACTTAAGA
CTAATCCCATTTTGGAAGCATTTGGAAATGCAAAAACATTGAGAAATGATAATTCTAGTCGTTT
TGTAAGCCCTTCATCATTCTGATTTTTGTATATTTTTAATTATCTTATGCTAAGTCGTTGAGAG
TTTTAGGTCTTCGTACGTCTCACAATGTTGTTTTGATATTAAAATATACAGGGGAAGCTAATAG
AGATTCATTTTAGTGAAAGTGGAAAGATATCGGGTGCTCAAATTCAAACCTGTAAGTGTAACCC
TTACAGTTGTGCAACTTCACTTTGTTTTTTCATTTCTACAGAGCTAACTTAGCTTCTTTTTTCT
TATTGCATGTTCTTCAAATTTTGCAGTTTTACTAGAAAAGGTAGCTTCTTTGGATGATTTTATT
TGCTTGATTTCTTTCCTTTTTAAACATGATTCATTAACATTGACATTTTTTCTTTGTATGTTGA
CTCATTTTAACAGTCTAGAGTGGTCCAATGTGCTGAAGGGGAAAGGTCATATCATATTTTTTAT
CAACTTTGTGCTGGGGCTTCACCTGCACTTAGAGGTATGGTTAGTAATAATGAAATACTATAAA
AGAGTCTTATAAAGAAGATTAAAAGAGGAGAATATAAAGTGTTTTTGACAGCTAAAACAATCAT
TCTTCTATTCAAAAAAATAAAATAAAACAATCATTCTTTAAAAACATTCAACCTAATTGTTGAT
GTCTTATGTTGGTTTTAGGATTAGCTTTTGATGGAGTTGGATTAGCTTTGTGTGCTTAATATAT
TGTCGCTAGCATCTCCATAAGTGAAAATAAAATTGTGTCAACTATCAGTTCTTAAAGTCAATTA
TCGTAATTTTCGGTGGTACCTATGTTATTGTAACTGGTGGACAGTTATTGATTTATGTTCTTTT
TCCCCACATTCATCATTTGAATGCAGAGAAGCTAAATCTGACAAGCGCCCATGAGTATAAATAT
TTGGGACAGAGTAATTGTTATTCAATTAACGGAGTTGACGATGCTGAACGTTTTCACACTGTTA
AGGTAATTCTCTCTTTCAGTTAGATACTTTCTTCCTCCTCTTCTCTACTCATTTCAGACCTTTA
TTTTTCTGTTTATTGATTTAAAAGTTTCTGTTGTTGCAGGAAGCTCTGGACATTGTGCATGTTA
GTAAAGAAGATCAAGAAAGTGTATTTGCAATGCTTGCTGCAGTTTTATGGCTGGGAAACGTTTC
CTTCACCGTTATTGACAATGAAAACCATGTTGAACCTGTAGCAGATGAAAGTAAGCCTCTTCAG
TCCCTAATTAGTGATGCCTATATTGTTTGAGTTAAATGTTTCGTGTGAACGTTGATTCTGCATG
CCCACTAGGCTTTTCTATGTTGTTGCTTACTGATTTCTTTTGTATATTCCTGATATTTCTTTTA
CGATTGTTATCTTGGAAGGTTTTTTGTTTCATTCTCTTGGGTCCTGGTGTTGGAAACAAGAATG
TTTGCTGCATAATATGTGTATGCATTTGTGGGCATGCAGATTCAATCTGGCAGGGAGATTATTT
ACGTGCTGCATTTGTTTTTTTTCAGGTTTGTCAACTGTTGCTAAATTGATTGGGTGCAACATCA
ATGAGCTTACGCTAACTTTATCGAAACGTAACATGAGAGTTAGGAATGATACCATTGTACAGAA
GCTAACGCTACCACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.135522082
Functional Information
Coding potential Y
Potential coding position 6950516-6953027(+)
Potential amino acid sequence MQLSYLNEPSVLYNLNYRYNQDMIYTKAGPVLVAVNPFKEVPLYGNRYIEAYRKKSNESPHVYA
IADTAIREMIRDEVNQSIIIRCICIHESMTYSISSSSGESGAGKTETAKIAMQYLAALGGGSGI
EYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSESGKISGAQIQTFLLEKSRVVQCAEGE
RSYHIFYQLCAGASPALREKLNLTSAHEYKYLGQSNCYSINGVDDAERFHTVKEALDIVHVSKE
DQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADESFLFHSLGSWCWKQECLLHNMCLSTVAKL
IGCNINELTLTLSKRNMRVRNDTIVQKLTLPQILQSWIQLPNGNWELGKILSTSGEESVISLPE
GKVIKVISETLVPANPDILDGVDDLMQLSYLNEPSVLYNLNYRYNQDMIYTKAGPVLVAVNPFK
EVPLYGNRYIEAYRKKSNESPHVYAIADTAIREMIRDEVNQSIIIRCICIHESMTYSISSSSGE
SGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSES
GKISGAQIQTFLLEKSRVVQCAEGERSYHIFYQLCAGASPALREKLNLTSAHEYKYLGQSNCYS
INGVDDAERFHTVKEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADESFLF
HSLGSWCWKQECLLHNMCLSTVAKLIGCNINELTLTLSKRNMRVRNDTIVQKLTLPQILQSWIQ
LPNGNWELGKILSTSGEESVISLPEGKVIKVISETLVPANPDILDGVDDLMQLSYLNEPSVLYN
LNYRYNQDMIYTKAGPVLVAVNPFKEVPLYGNRYIEAYRKKSNESPHVYAIADTAIREMIRDEV
NQSIIIRCICIHESMTYSISSSSGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAF
GNAKTLRNDNSSRFGKLIEIHFSESGKISGAQIQTFLLEKSRVVQCAEGERSYHIFYQLCAGAS
PALREKLNLTSAHEYKYLGQSNCYSINGVDDAERFHTVKEALDIVHVSKEDQESVFAMLAAVLW
LGNVSFTVIDNENHVEPVADESFLFHSLGSWCWKQECLLHNMCLSTVAKLIGCNINELTLTLSK
RNMRVRNDTIVQKLTLPQILQSWIQLPNGNWELGKILSTSGEESVISLPEGKVIKVISETLVPA
NPDILDGVDDLMQLSYLNEPSVLYNLNYRYNQDMIYTKAGPVLVAVNPFKEVPLYGNRYIEAYR
KKSNESPHVYAIADTAIREMIRDEVNQSIIIRCICIHESMTYSISSSSGESGAGKTETAKIAMQ
YLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSESGKISGAQIQTFLLE
KSRVVQCAEGERSYHIFYQLCAGASPALREKLNLTSAHEYKYLGQSNCYSINGVDDAERFHTVK
EALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADESFLFHSLGSWCWKQECLL
HNMCLSTVAKLIGCNINELTLTLSKRNMRVRNDTIVQKLTLPQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017