Detail information of Zm00001d014275_circ_g.2


General Information
CircRNA Name Zm00001d014275_circ_g.2
ID in PlantcircBase zma_circ_000279
Alias NA
Organism Zea mays
Position chr5: 38938882-38939028  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Zm00001d014275
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing Zm00001d014275_circ_g.1
Support reads 2
Tissues shoot
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d014275_T002:1
Zm00001d014275_T003:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACACTAATTCAACCCAATGAAGATGTAGTCATGAATGCATTGTCATTGCCAGTACTTGCCAGT
TCTGTCCAGgttgcatcaacttatctgggaccacttgctgccaataacgaagctctactgaagc
ccttgaaggaaacattggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGCATCAACTTATCTGGGACCACTTGCTGCCAATAACGAAGCTCTACTGAAGCCCTTGAAGG
AAACATTGGTGACACTAATTCAACCCAATGAAGATGTAGTCATGAATGCATTGTCATTGCCAGT
ACTTGCCAGTTCTGTCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.176873696
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015