Detail information of BGIOSGA023545_circ_g.6


General Information
CircRNA Name BGIOSGA023545_circ_g.6
ID in PlantcircBase osi_circ_016592
Alias Chr06:29906189_29907350(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 31195580-31196741  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA023545
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA023544_circ_ig.1 BGIOSGA023544_circ_ig.2 BGIOSGA023545_circ_g.1 BGIOSGA023545_circ_g.2 BGIOSGA023545_circ_g.3 BGIOSGA023545_circ_g.4 BGIOSGA023545_circ_g.5 BGIOSGA020597_circ_igg.1 BGIOSGA020597_circ_g.1 BGIOSGA020597_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA023545-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCAGGTATGGTCCATGGATGGACACTAATCTAGTGGTCCCATTGGATGCAACCAGATGTAAA
GTGATATTTGATTATTTCCTTGACAAGTCTCTTATGgggctggacatatggactggatggagtc
ctcctaaaagccacgcgaatatcaggaatcaagaacttcaacaaaaatgtaagtcccaactttt
ttggggat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGCTGGACATATGGACTGGATGGAGTCCTCCTAAAAGCCACGCGAATATCAGGAATCAAGAAC
TTCAACAAAAATGTAAGTCCCAACTTTTTTGGGGATCTTCTATACTTCCTGATTCCACTGCCAG
AACTCATGCAGTTATGCTTCTTTCTGGAAACAGGATTTTGGTCTCATTCCTATTAAAGTGGCTA
CATGGGGGCCTTTTGTATTGGCCAAATTTGATAGTGGTTTCTCTCAAGAAACTGCTGATAACAC
AGTTGGAGATGAATGGCTGGGTAGTGCTTCGGATCTGCTGAGTAGAAATGGCATTGACACCTCG
TTGCCTCATATTTGCAGGCGAGAATATATAATTGAATGTAATTGGAAGGTGCATTATCGATAAA
CTGTCATGATGATATTTCGATACAAAAAAACTGAAAAATGCAATAAGCTTCTTTTCAGTATATG
CTTATACCCATCGGATCCTTCTCTTGCAGGTCTTTTGTGACAACTATCTGGATGGTGGCTATCA
TGTTCCATATGCGCATGGAACCCTAGCATCTGGTCTACAGCTTCAATCCTACGAAACACATGTA
TAGTTTGTAAACCCACTTTCTTTCTACTGTTTTTCACTTTTTCCTTTAGTAATAGTTGTTTAAG
TATTGGTGACTTGGTGTCGAATAGATGGGTTTTACTAGATCATGTTCTGTTGGATTGTTCTTGT
GTAGAAATAATCAGTTTCAATTTTTTTTATTACTTTTTAGGATCTTCACATCTGACACCAATTC
CCACCACTGTTCTGATCTACTTTCTTATGACTATTTTGCTCTTTTGGGTGGATTGCTGATTAGC
ACGTATTTATCTTTTTGCAGACATATGAAAGAGTTAGTGTTCAAAGGTGTGAAAGTGTCCAAGC
AGAACAAAATGATTTCGATCGCTTAGGGACAAAAGCTATCTATGCTTTTGTTTATCCAAACTTT
ATGATTAACAGGTGGCTCCATTATCCTCACGAACTGTTAGTCTGTTACTCTAGCTTCCTAACTG
TATTTATCATGCATGCAAAATGTGAAAACTTCCTTGATTTTCAGGTATGGTCCATGGATGGACA
CTAATCTAGTGGTCCCATTGGATGCAACCAGATGTAAAGTGATATTTGATTATTTCCTTGACAA
GTCTCTTATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021