Detail information of Solyc06g073840.2_circ_g.1


General Information
CircRNA Name Solyc06g073840.2_circ_g.1
ID in PlantcircBase sly_circ_002079
Alias NA
Organism Solanum lycopersicum
Position chr6: 45596723-45601632  JBrowse»
Reference genome SL2.50.38
Type   ei-circRNA
Identification method CIRI; find_circ
Parent gene Solyc06g073840.2
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Solyc06g073840.2.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAACATGAGTGAACAATTTGGGGTGAAGCTCAGTCAGGCAGATGCAGAGAAAGCTCAACAGGCA
ATGTCATCTTTGTCACCAGATGACTTGGAAAAGATGggttttgacatatgacgacaagaatatc
aaagctctttatcgtaggggtcaagcttataaagagctgggacagttagaagtgagtattttgt
cgactctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAG
CTGGGACAGTTAGAAGTGAGTATTTTGTCGACTCTTGTGACTTTTCTCATTGTTTGTGTTTTGT
TCCAACGCTTCTCCTACAATGTACGATATTTCCCAAGCCTCTTATTTCTTTTTTAAACCATGAA
TAGGATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTG
ATGTCTTAAGGTATGTAAATATTTGTTTGAAAGGGTACCCCTCTCCTTTTTCTTTTTTGATCTC
TTGCTGAAACTCTAGTGCGCATGGTTTTAGATGCTAATGAATCTCTCTTTTCTGATTCAGGGGT
GTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGACGTATGTTATGCATATCCATATTTT
AGCTGAATGTGAATTTTATTAGAATAATTCCGATGTTATTGAACTTGAGTTTTCCTTCCTCGGT
CAGGTAGAGGAGGATTGGTTATTGAAGAAATAATTGAAGAAGAACCATTAGTGTCTTCAGAAGC
CGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAG
AGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAA
ATGACCCCGAATCCATGAGGTTTGATTCTTGATGAGTTTAATTCCTTATATTCACATATCACAT
GAAACTTCTGATTTTCTCCTATATTTTGAACTTATGATTGCTTATGTTTATGTGGAATTCATTT
CGCTTGTGTTCTGGTCATTTAGTTGAAGAATGACATAATAATGACCATGATGTTGCAAAAATTT
CTTCCATAACAATATATATGCTATTTGCTACTCTCAAATTTCACACCCGTTTTACTTTCAAGCT
CTGAATTGGTGTAGATTATTGATTAGACATAATACATAAATATGCCCTTTAACTTAGCATCATT
TCTCACATCTATGCCCTTCAAACTTTGGGTGTGCTGTGTGCACAAGTAGGCACTTTAATTTGTA
TTAAGTTGAACAAGTGACATGATACACATAGGACATAGGATGAAAATCGTCATGTAGGATGTCA
CATAGGAAGCATGTGTTTATTTATTCAACTTTGTTCAAGTTTAAGTGCCTACTTGTGCACGCCC
AAAGTTGGAGGACATAAATGTTAAGTTGAAGCCAAGTTAAAGGGCATATTTATTTTATTATGCC
TATTGATTATGAGTATACTTCTTTAAATTGCATGTCTTCTTTCTCTAACTTTTTCATGCACAGA
TAGTCCTTTTATCTTTTGGATGTTCTACTTATCTTGCATGAGTGTTATTGCATATATGGCAACG
TTATACTGAAGACAGGGTTACTATAGCTGTGTCTGTGATCAGATGCACTGGTTTATTTAATTTC
ATATTGCATGAACATTTACTGTTGTGTAGTCTCTTATTCTTCAATGTTTGTTGCTTCATTTGTT
TTGTATCTTGTTATTTTGTGGTCATATTTTTCTTGAATCCTGCTTTGAAGACATATCTTTTGAG
CGGAGGCTCTTAAGAAATAACCTCTCTACCCCACAAAGGTAGAGGTAAGGTATGTGTACATCCT
ACCCTCAAAACCACTTGTGGGATTAGACTGTGTATCTCGTTGTTGTACGGCATAAACATAATCT
GACATCTAGGATATTGGTCTGTGGTAAGATATTCTAAATCTCGTCTAGGTGCAGTGATAATGTT
GTCATTATCCTACCTTCCCTTTGCTTGGTGCTGCTGAAATAATTACTTATATTCAAATCCACTC
TCCTATGAGAAATCCTATTAGCTACATGTTGTCCTTTCTTCTTTAGCAATCATCTTCTTTGTCT
TCTTCTTGTATAAGATTGTATTCACCGATGTTGCAGTCTTTCAATGTTTAAACATCAGTCAATA
ATGATGCAATTTCTATTTCTATTGTATGGTTGTAGATCCTTCCAGAATTTTATTTCTCGCGCTG
ATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAA
GACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCA
TCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCT
CAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTC
TCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCG
GCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAA
ATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAA
TGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATG
AAAGATCCAGCCATGAGACAGGTTTGACTTCAATCCTTTCTTGTGGAAATAGTATTTGTCCTCT
GTTCTTTATTTTTATATTTGATGCATATTAGGGGCTTTATTATTTTCTGGGTAGTGATATGTAT
TTTAGTATTGCCTATACCATCAATAAAGATCCAATCATATTTCCCTAATGTTCACACTGCTAAC
TCAAAAAATCCTGATTTGAATTTGTCAAATACCCTAGTTCCTCCACTAACCAAATCATTATTTC
TTACTTTTCTCTGTTTTAAGATAGATACTGTTCCACTTTGAATTTTTGGTAGTCCATATTTGAA
AGAGAAACAACCCCTACCTTGTGAGGTAAAGAGGATGTTTCTAATAGACGCTCAGCTGAAGGAG
CAACATATCAAAGTAGTCCGAAAAAAGAAATATGGAATTGAATTGGCCATGACAAATAATATAG
GAAGCATGAAAAATGAGTTGTTACTACAACTGAATGCTTAGATAATTGAAGCACAGAAAACAAT
AGATTGTAACAGAAATCGAAGAACAATTCCTACAATCGTAGTACTACTAATACGGGTGTTGGAT
GAGAAGCTAGACAATGCACCTCAACGCTAATTTTTGTCCTTCATTACCTCCTATTTAAGGTCAT
GTCCTCGGTCAATTGACGTTGCGTCATGTCCTGTCTAATCACTTCTCCTCGATACTTCTTCGGC
CTACGTTTACCGCTCTTAAAACCTACCAAAGCTATCTTCTCACACCTCAACACCAGGGTGTCTG
TGCATCTTTTTTTCACATGCCTCAACATTGCTTCCCTTCAATATATTTGTTTACTTTGGCTGAA
CACCAAATCCCAAACTGAATGCTATCATCATATTTAATGGAACTACCTGGCGAACAGATTGACC
GACTCTCTCAGGGTGTTTCCTCCATTAGCTCTTGTTGCTCCAATAATGTAATTACACTTGCAAG
GAATATTGAAATTTGAACCGGAAGCAAGCACCATACCCACAGATGCCCCCTCTCAAATAATAAA
TACAAGCAGCCTTGTCGGGTCGTATATGATACGATCTGGGCCACTGCCTACCGACAATTGCCAC
ATAGAAATCTTAATTGAACGTCCATATCTTTCAGTTTTCCTCCATCTCCGGGTAGAAATGAACG
CGGGACGTTTGATGTCTTACTCGTTTAGATACGATGAGATAATCATCAACTAGGTTGCTCGGAC
TCTTCACTTTTGGTGCTGCACCCGTGTCCATACGACATGGGTGTGGGTGTGAGATGTGTGTCTG
ATTTGGTCAACCGATTGTGGGTACTTTGACCAAAATCGATGGGGAAAGTTTAGAAATTTCTATG
TCACTGTTTTTCCTTTAATCTCCTTCAAGGATTCTCCTCATGTTCTCCACATAATATCTCATAA
TGTAGGTTTTATAACTCTATTTTTAGGCGAATCCCCGCCTATTTTCATATATGGGTCCATATCC
CTGAATCTTAAAAATTAAATCACGAATGATCCAACCTGTAGATCCATACCCATATTGGACAGCC
GAGTCTGAGCAACTTAGATCATCAAAGTTGGGGAATCTCAACTGGAATACCTCACTGTGCCAGT
ACCGGTTGTGAGCCACATTCGGCGAAGAGTTTCTGTTCTTTGTCCCCTAAATGCATTTTAAATT
GCGAGTAAAATAAAAATAATTAGTGGAATCTATAGGTGTAGCTAAAGACAATTTCGGAAATTAG
AAACGTATTCGTTTTTTGTTTGGGGTGAGCTCACTACATTGTCTCATTGAGTAGTGTTTCCTCA
TAAAGGAAAGAGAGACGGATGAGTATAGGAATGTGTAAAAAAGCACATGCATTGATGACACCAT
GAGTCGGGTGATGAAAGATCTTCACGGTATGTTCTGTAAGCATATTAGCTAATTACCCTGTTTT
GGATCCTTTTCAGTCAGCAATCCTCGCTTATTTTATTTCTTGTATGTTTTTTTTCTAAAATAAT
TGCCATGTGTTGTGAACTTCCGGTAAAAATGTTTACTTTTCTAATAATATTACCAAATGTGGGG
GTTAAACTTCTCTGTCCTTTGTATTTATTCGTTTACAAGCTTTTACAGAGGTTTCTGCCTTCAA
TTACTACTGTGTTATATGTGCCTGTACCTGCTTTATGCTGATGTATCTGGGTTCTCATTGATTT
ACTCCTTGACACGTTTCATCAAATTGACAGATGTTCTCTTCAATGATTAAAAATATGAGTCCAG
AGATGATGTCTAACATGAGTGAACAATTTGGGGTGAAGCTCAGTCAGGCAGATGCAGAGAAAGC
TCAACAGGCAATGTCATCTTTGTCACCAGATGACTTGGAAAAGATG
Conservation Information
Conserved circRNAs NA
PMCS 0.164968596
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yang et al., 2020