Detail information of Csa1G351950_circ_g.3


General Information
CircRNA Name Csa1G351950_circ_g.3
ID in PlantcircBase csa_circ_000362
Alias Chr1:14061844_14065304
Organism Cucumis sativus
Position chrChr1: 14061844-14065304  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa1G351950
Parent gene annotation NA
Parent gene strand +
Alternative splicing Csa1G351950_circ_g.1 Csa1G351950_circ_g.2
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Csa1G351950.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGCTTTCAAACAAGAGGAGTTGTGGGAAAGTGCAAATGAACGCATTCCTTGGCATGAAAGATT
GGACGGGGAAGAGGTTATTCAAAACCGTGTACATGAacccaaatggccttcatcttcttttgtt
tcatctgatggattaattacagccatggcctaccgcttgccacacgtggtatgtttctcttaga
atttagta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACCCAAATGGCCTTCATCTTCTTTTGTTTCATCTGATGGATTAATTACAGCCATGGCCTACCGC
TTGCCACACGTGGTATGTTTCTCTTAGAATTTAGTAAAATAAAATTATGATATTTGGTCCCTTT
GAGCTCAATGGGCTGATTACGCTTACTTTGACAATTTTCAGGTCATGGGTGATAGATCAGGCAA
CATTCGTTGGTGGGATGTAACAACCGGGCATTCTTCATCTTTTAACACTCACAGAGAGGGAATC
AGGCGAATCAAATTTTCCCCTGTAGTTCCTGGAGACCACAGTAGAGGACGTATAGCTGTTCTAT
TTTATGATAATACATTTTCCATATTTGATCTTGTAAGTTTAATTTATATGTTGTGAATGTAGAT
CTAAACTAAGCAGTTTCCATTTTCCGTATATTTCTGATTCTATTGCACTTCATAGTTGTTCATG
CTAAATATTATTTCTTTCCGTACCAAAGAAGAAACTTATGAGGTTTTTAATATTAGGCCCTTGA
ACACATGGATAAAGTATTTTTTTTTTAATATAGATACAATATATGTGTATGTGTGTGTTTGTTT
TGTGACCGAATACGCGTTTGGGCTTACTAGGATCTGATACCATGTTATCTAGAATTCAGAGAAG
TATCTTTCTTATTCATCTTGAGTCAAAGGAACGTTACATATTTATATAGAGAATAAACTAAACC
CTAGAGACTATGTAAAATTACAATAAAGGACATATGAGATATATATAAATATATATATATCATA
ACAGTGTATATTCATTTTAATCTTTGCTCTGTAGATTATAAATTTTTGGAATTTTCAAATTAGT
AAAATTTTTGCCCCCTTTGCTGCAGTTGGTAAAACTGTAGATTAGTATTAGGCCCTTTATCATC
TAAAGAGTGCTGGTTAGAGCCCCTTCCGGTAGGGGGCGAGGTTTCTTGTAGCCCCGTGCATTCT
TTCATTTTTTCTCAATAAAAGCTGTTATTCTTTACAAAAAAGTTTAAAAGAAAATAAGACATCC
AAAGAGTGCTGATTCTTTGAATATTAGGTTTGTGGGATTGCATGCCTGTCTTCTCTCAGATTAC
GTAATACCATGGATAATTTGGAGGGGTTCTTTGTTGTTGATTATAAATCCATGTATACTTTTTG
CTGGCAGGATTCACAGGATCCCTTGGCTAATTCCATTTTACAACATCAATTTCCAGGGACCCTT
GTATTGGAACTTGATTGGTTGCCTTTACGAACAGATAGAAAAGATCCTCTAGTATTATGTATTG
CAGGAGCTGATAGTAGCTTTCGCCTTGTTGAGATCATAATGTAAGTACTGGAATTCCTTTTCAA
TCTTGAAATTTAGTTTTTAAATTATTTGGTTTATTGTTGTTGGTATTTTCTGTACATGATTTTA
TTTAAAAATGTTATTGCTACTTGCATCAATGCCTAATGAAATATTCAGATTAAAAGTTAAAATG
ATATATTCATATATATTTGAAATGGTACACATTTGTAAGATTTTTTTTCCTCTTTCTCCCATCA
GATGTCTTATGAATTCATTCATGTGCTTGATCAGAGTGTTATTATTTATAGTTAACAAGGAAAC
CAGATGAAGACATGTAGACTACTAAAGTAGGTTGAATGTTGACTGTCAACTGAAAAGAAGTACA
TTAGTCCCTAGTCGCATTGTTATCGTCCTGTCATGCTATTTGGGTTCTTATTCCATATGCACTC
AGTGGACTTCTTTTTTTCCGGGCAGGACAATAGTTACTGTATTCTTCTGATGTACGGTATATAG
GACACTGCAAATAGAAAAACTCAGCCAATCCTTGATTCTTCAGGGCATAAACCATAGACTTAAG
TACTAAACAATACGGTATCTGGTATATGCAGCTGTTTAGAAAGTTGCTCGGCCTCTTGGGTGTT
GCAAGCATGCTGCTCTGTTTTCTATCTTTCAAATGTCTATGGTTTCAATGCTATTTGTGTTTGT
GCTTCTGTAACCCTTATTTTGTGCAGTAATGAAAAAAAGCATGGCTCACTTTATGCAGTAATGA
AAAGAAGCATGGCTATGGACGCAAGACGGCCAAGGAAAGATTTCGGCCAATGCCTATATGTTCG
CCTTTGTTACTTCCTACTCCACATGCATTGGTAAATATTTTTCATATGTTTTCATCACATGCAT
CTAATTCCTCTTCATAATCTATTGTTAGATTAAAACTGAAACTTATTTCTTTTTTTTGTTCAGT
CACTTTTTTTCGTTACATTTTGGTTGGGTTCTAGTTTTTGCAATGTAGGAAGCATTTGTTGGGA
GTAGAGATGTAGATGGAAGTGTCAATTCTTATTTACATTTTTTCTTCAGTCAATTCTTATCCAT
TGCATTTAAACAGATTCTAGTTTTTTCCATGTGAGAAACTTTTGTAGAGAACAGAGGTGGAGAT
TTGAAGTAGACAAATCAAAGATCCCATATCAAATGCTAATTTTGGAACACACCCACACACACAT
ATTCGACCGAAACTCACGTTAATTTTGTTCTCCACAGGCATTACGGATGATCTTGCAGTTAGGT
GTAAAGCCCTCCTGGTTAAAGAAGAAGCCTCAACTCGTATCTGGAGTTTCAGGAGGTGGCCATG
ACCTTCGGAGTCACATGATTGACTTACCACCTGTTGGTGACTCGGTGGTGCCAGAAATGCTTCT
CAAGGTGCTTGAACCTTATCGTATAGAAGGTTGTATTCTGTCTCACATGTTTTCATGACCAATG
GCCGTGAAAACTATCTAGTCTTTTCTTTCTAAACATATGATGATACATTGAAATTCATTCTTCT
CACCTACACTCAATGTTCCAACGTTAAAGGTTGCATACTTGATGATGCGAGGGCAAAATTATAT
TCCAAGTTAGTACATAAAGGCTCTGCTTTGAGGTTTGCCTTTGCTGCTGCAATTTTTGGTGAAT
CCTCTGAAGCCCTCTTTTGGCTACAGTTGCCTAGTGCTCTCAGTCATCTCATGAATAAGTTAGC
AAATAAGTCTCCCCAGAGAGGTCAATCCTCAATGTCTAATGTGGATCTTGATGAAGCTTCGATG
CTGAATAGGATAACCTCAAAGGGAAAATCAATGCCAAGAACTGGGAAGAAAGAAACACTCGTAA
ATATCTTTTTCATTTGGTTCCTTATTCTAAGAAAAAGTCAAGTTTCATTGCTTGACTTTTTAAA
GAGCAAATACGTTTTGCAAATTAAGAACCATCTATCATTCTTACTCCTCTCTTTTGAAGCTTGT
AGAAGTTTTACGTCAGCTTTCTCAATATTTTCTATTATTTCATTATTGCCGACGATGTGACTCT
CCTTGTTGCAGGGTCAAGGCCAACTTATGGCAATGGCTTTCAAACAAGAGGAGTTGTGGGAAAG
TGCAAATGAACGCATTCCTTGGCATGAAAGATTGGACGGGGAAGAGGTTATTCAAAACCGTGTA
CATGA
Conservation Information
Conserved circRNAs NA
PMCS 0.113725296
Functional Information
Coding potential Y
Potential coding position 14061897-14065301(+)
14065242-14061884(+)
Potential amino acid sequence MAYRLPHVVMGDRSGNIRWWDVTTGHSSSFNTHREGIRRIKFSPVVPGDHSRGRIAVLFYDNTF
SIFDLDSQDPLANSILQHQFPGTLVLELDWLPLRTDRKDPLVLCIAGADSSFRLVEIIINEKKH
GYGRKTAKERFRPMPICSPLLLPTPHALALRMILQLGVKPSWLKKKPQLVSGVSGGGHDLRSHM
IDLPPVGDSVVPEMLLKVLEPYRIEGCILDDARAKLYSKLVHKGSALRFAFAAAIFGESSEALF
WLQLPSALSHLMNKLANKSPQRGQSSMSNVDLDEASMLNRITSKGKSMPRTGKKETLGQGQLMA
MAFKQEELWESANERIPWHERLDGEEVIQNRVHEPKWPSSSFVSSDGLITAMAYRLPHVVMGDR
SGNIRWWDVTTGHSSSFNTHREGIRRIKFSPVVPGDHSRGRIAVLFYDNTFSIFDLDSQDPLAN
SILQHQFPGTLVLELDWLPLRTDRKDPLVLCIAGADSSFRLVEIIINEKKHGYGRKTAKERFRP
MPICSPLLLPTPHALALRMILQLGVKPSWLKKKPQLVSGVSGGGHDLRSHMIDLPPVGDSVVPE
MLLKVLEPYRIEGCILDDARAKLYSKLVHKGSALRFAFAAAIFGESSEALFWLQLPSALSHLMN
KLANKSPQRGQSSMSNVDLDEASMLNRITSKGKSMPRTGKKETLGQGQLMAMAFKQEELWESAN
ERIPWHERLDGEEVIQNRVHEPKWPSSSFVSSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH
SSSFNTHREGIRRIKFSPVVPGDHSRGRIAVLFYDNTFSIFDLDSQDPLANSILQHQFPGTLVL
ELDWLPLRTDRKDPLVLCIAGADSSFRLVEIIINEKKHGYGRKTAKERFRPMPICSPLLLPTPH
ALALRMILQLGVKPSWLKKKPQLVSGVSGGGHDLRSHMIDLPPVGDSVVPEMLLKVLEPYRIEG
CILDDARAKLYSKLVHKGSALRFAFAAAIFGESSEALFWLQLPSALSHLMNKLANKSPQRGQSS
MSNVDLDEASMLNRITSKGKSMPRTGKKETLGQGQLMAMAFKQEELWESANERIPWHERLDGEE
VIQNRVHEPKWPSSSFVSSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGHSSSFNTHREGIRR
IKFSPVVPGDHSRGRIAVLFYDNTFSIFDLDSQDPLANSILQHQFPGTLVLELDWLPLRTDRKD
PLVLCIAGADSSFRLVEIIINEKKHGYGRKTAKERFRPMPICSPLLLPTPHALALRMILQLGVK
PSWLKKKPQLVSGVSGGGHDLRSHMIDLPPVGDSVVPEMLLKVLEPYRIEGCILDDARAKLYSK
LVHKGSALRFAFAAAIFGESSEALFWLQLPSALSHLMNKLANKSPQRGQSSMSNVDLDEASMLN
RITSKGKSMPRTGKKETLGQGQLMAMAFKQEELWESANERIPWHERLDGEEVIQNRVH
MNAFLGMKDWTGKRLFKTVYMNPNGLHLLLFHLMD*
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhu et al., 2019