Detail information of BGIOSGA032755_circ_g.3


General Information
CircRNA Name BGIOSGA032755_circ_g.3
ID in PlantcircBase osi_circ_008873
Alias Chr10:12416819_12419401(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 9049792-9052349  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA032755
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA032755_circ_g.1 BGIOSGA032755_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA032755-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACTATGTTGATATTTTGTACCTCCAGGTATGGGTCTTATCCACTAAAGGGCAAACACTGCCAT
GAGATGGCCCTGAGGATTCTTCTTGCTTGTATTGAGggttaacaacagggatctttccattgct
gtattgagatcgtttatttcgagaagacgtgaagagcatgatatccaattaagaagaggtattt
agtttggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTAACAACAGGGATCTTTCCATTGCTGTATTGAGATCGTTTATTTCGAGAAGACGTGAAGAG
CATGATATCCAATTAAGAAGAGGTATTTAGTTTGGGGAAAAAAAAATGCACTACTTATTGCTCT
ACTACCCATATTTCTCTAATTGCTTCACCAGTATATCCAACCATTACCATGATGAACCAGGCAG
TCATGCTGAACTACCGCCGAAACATCAGGGCCACATAAGAGGATCATCTGAGGACAAGGCATTG
AGTGAAGAAATTAGCTATAGAGCACCAAAAGTTCTTGAGGTACATTACTGAATTCTTGCGCTGA
CACACATATGCGCGCTCGCACATGCCGACACGCACGCAAGCACCCTCATATACCTATACCTGTA
CTTGGGACAACAGTGTATAATGATGGTCAGACAAAACAATTATGAAAAGAATTATATTTGATCC
TGGATTGTTTGTTTAAACATATTTTATGTAGTTTAGTTTAGTATTGAGATTCATCCATTGAATA
GATAGGGTAAATAGAGCTTGCATAGTTGCATATACAATCTTGGTTCTTTCTCTTCAGTTTCTTT
TTGTCATGGGTCTTGCAGGCTTTAGCTGCATCGGGATTAAGAGCCATTAGGTATGCCCTTGAAG
TAGATGGGATTGGGGAAGTTATAGCTGTTGACAACAATGAAGGTACTCATATTATACTTCTATG
ACAATGTTGCGGATGCTTTTTCAGAATTTCTGATTACTAGTTTTCTAACCTTTGTATAGTTCAA
TGAACCCTTTGTTCTATATGATGGTTGTAAAAAAAATGTTTTATCAATTGCAGTAGCTATAGAG
GCTGTAAAAAAAAATATCCACCACAATGGCAGTGTGGCTTCTTCAAAGGTGGTACCTCATCTTG
CGGATGCACGTGTTTACATGCTCACCCACCCAAAAGAATTTGATGTGGTATGGCTTTATTACTT
TTAAATGTATATGTTTTATCATCAAGAATAATTAAGTGGCAATTAATTAGGTATGGTATTATGT
TGCTAGCTAGTCTGATTAGGTAGAACAATACTTAAACTTGTACCAATAAAGAAATATCTGTTTG
CTGCCAGTCCTTTCACAGATTAGAAAACTAAATCCAGCAGATGTAGGCTGTGTTCGCTGGATCA
TGTTCCCAAGCGGAACAGTGTGCACGGAAAACGGAACGGTCTATTAGCACGTGATTAATTAAGT
ATTAGCTTTTTTTTTTCAAAAATGGATCAATTTGATTTTTTTAAGCAACTTTCGTATAGAAACT
TTTTGCAAAAAACCGCATCGTTTAGCAGTTTGAAAAGCGTGCACGCGGAAAACGAGAGAGAGGG
GTTGGGAAAAAGGGGTGCCGAACACAGCCATAGAACTCTTCTCTACATACAGGCATGATTCATA
ATTCGATGTTTCAATAAACCACATACAGGCATCTAAAGTTCTACAGATTTTGATTTTCTTCTTT
TATGCTTCCAACCTGTGGATGCTAATATCTCTTGCTTATAAATCAAATACTTGAAGGCAACTAC
TTAAATTGTACTCCCTCCATGGATATTTATACAACTTTTTTTTTGTTTAAAAAAGTCAAAAGTT
TTATGGACTTTGACCAACAATTAGTCAAATTACAAGTACATTTAGTGTGTACAAAATTTATCAG
AGACTCATATTTTGAAACGTTTTCACATTCACAAATGTTGGTTCAATAGATCTGAACCATTTAT
TTCGTGAGCAATCGATGCCAACGTTTAATCTTGAAGACATTTTCAAAATAACATATGCCACAGG
TAATAACTACAATTTAGCCACTCACACAATTTATAAAAAACTGGTATTTAAGGTGAGTATTAAC
TCAACCAAAGAACATTAAAATTACCATACTACTCATATTTAAGTACATTGGGAATGGGTCAAAC
AAGAGAAAGAAGCAATAAATTGGCATGCATGTGTTAGAGAAAGAAACGGAGGGAGTAATGTGTT
AGCGATCAATTATTGAAATGCCATTTTATGGATGTAATTTTGTCTTGAAGTGACTAATCTAGAT
GTTACTGTATGTATTAATGGTTGAAATTTTGAGGTTTACATGTTTATTATCCAAGGCAGTCAAT
TGCTTGTTCTAAGTTATTAAAAAAAAGTAATGTGACATTCTCCTCAATCCTCATCTTTTTCCAT
CTCATCTGCACATATACTTTGTACATATCCGATTCCAGGGGAAATATTATCCATATTATTCTGT
ACTAATGCTATATACTTCTTGAATCAGGTTGACCTTGACCCTTATGGATCTCCTGCAGCATTTC
TGGATTCAGCAGTTCAGTGCGTTGCAGATGGTGGTATTTTGATGTGCTCAGCTACAGACATGGC
TGTGCTTGCTGGTGGCAATGCAGAAGTTTGCTTTTCCAAGTTAGTTTCAAGCATTAAAATCAAT
TGCTGAACATAGGACTACCAAATCCGAACTATGTTGATATTTTGTACCTCCAGGTATGGGTCTT
ATCCACTAAAGGGCAAACACTGCCATGAGATGGCCCTGAGGATTCTTCTTGCTTGTATTGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021