Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os11g0155600_circ_g.1 |
ID in PlantcircBase | osa_circ_008509 |
Alias | NA |
Organism | Oryza sativa |
Position | chr11: 2606803-2608102 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | u-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os11g0155600 |
Parent gene annotation |
Conserved hypothetical protein. (Os11t0155600-01) |
Parent gene strand | - |
Alternative splicing | Os11g0155600_circ_g.2 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os11t0155600-01:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.175869083 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2608059-2606823(+) 2608093-2606805(-) |
Potential amino acid sequence |
MCSGIDHRTMPFLQNHRSLQGP*(+) MALSYGLSLNTSFVLSIQNQCNLANQIISVERVNQYMDIESEAAEVIEENRPAPDWPQVGKVEL RDLKIKYRQDAPLVLHGITCTFEGGDKIGIVGRTGSGKTTLIGALFRLVEPAGGKIIIDSADIT TIGLHDLRSCLGIIPQDPTLFQGTVRYNLDPLGQFSDQQIWEVLDKCQLLETVQEKEHGLDSLV VEDGSNWSMGQRQLFCLGRALLRRCRILVLDEATASIDNATDAILQKTIRTEFKDCTVITVAHR IPTVMDCTMVLAMSDGFVGMALSYGLSLNTSFVLSIQNQCNLANQIISVERVNQYMDIESEAAE VIEENRPAPDWPQVGKVELRDLKIKYRQDAPLVLHGITCTFEGGDKIGIVGRTGSGKTTLIGAL FRLVEPAGGKIIIDSADITTIGLHDLRSCLGIIPQDPTLFQGTVRYNLDPLGQFSDQQIWEVLD KCQLLETVQEKEHGLDSLVVEDGSNWSMGQRQLFCLGRALLRRCRILVLDEATASIDNATDAIL QKTIRTEFKDCTVITVAHRIPTVMDCTMVLAMSDGFVGMALSYGLSLNTSFVLSIQNQCNLANQ IISVERVNQYMDIESEAAEVIEENRPAPDWPQVGKVELRDLKIKYRQDAPLVLHGITCTFEGGD KIGIVGRTGSGKTTLIGALFRLVEPAGGKIIIDSADITTIGLHDLRSCLGIIPQDPTLFQGTVR YNLDPLGQFSDQQIWEVLDKCQLLETVQEKEHGLDSLVVEDGSNWSMGQRQLFCLGRALLRRCR ILVLDEATASIDNATDAILQKTIRTEFKDCTVITVAHRIPTVMDCTMVLAMSDGFVGMALSYGL SLNTSFVLSIQNQCNLANQIISVERVNQYMDIESEAAEVIEENRPAPDWPQVGKVELRDLKIKY RQDAPLVLHGITCTFEGGDKIGIVGRTGSGKTTLIGALFRLVEPAGGKIIIDSADITTIGLHDL RSCLGIIPQDPTLFQGTVRYNLDPLGQFSDQQIWEVLDKCQLLETVQEKEHGLDSLVVEDGSNW SMGQRQLFCLGRALLRRCRILVLDEATASIDNATDAILQKTIRTEFKDCTVITVAHRIPTVMDC TMVLAMSD(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |