Detail information of AT1G30810_circ_g.1


General Information
CircRNA Name AT1G30810_circ_g.1
ID in PlantcircBase ath_circ_005149
Alias NA
Organism Arabidpsis thaliana
Position chr1: 10940193-10940265  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder
Parent gene AT1G30810
Parent gene annotation Lysine-specific demethylase JMJ18
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT1G30810.3:1
AT1G30810.2:1
AT1G30810.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGCACCCCATTCTCCAAGTCAGCTCCATAGTAAACcggtaaacttctcggctcttttataaaa
cccgcttcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGTAAACTTCTCGGCTCTTTTATAAAACCCGCTTCCAAGCACCCCATTCTCCAAGTCAGCTCC
ATAGTAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.170094409
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017