Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0816900_circ_g.1 |
ID in PlantcircBase | osa_circ_022448 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 34259582-34260296 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os03g0816900 |
Parent gene annotation |
Conserved hypothetical protein. (Os03t0816900-01) |
Parent gene strand | + |
Alternative splicing | Os03g0816900_circ_g.2 Os03g0816900_circ_g.3 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os03t0816900-01:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_013816 |
PMCS | 0.244118228 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
34259662-34260293(+) 34259664-34259584(-) 34259633-34260283(-) |
Potential amino acid sequence |
MIETDAVIEKKPRKIKKKALRWRKGETLESLLIANSEFDVAGAGASLKRYSDPSFFKTEHSSDM IETDAVIEKKPRKIKKKALRWRKGETLESLLIANSEFDVAGAGASLKRYSDPSFFKTEHSSDMI ETDAVIEKKPRKIKKKALRWRKGETLESLLIANSEFDVAGAGASLKRYSDPSFFKTEHSSDMIE TDAVIEKKPRKIKKKALRWRKGETLESLLIANS(+) MSEECSVLKKDGSEYRFKEAPAPATSNSEFAISNDSSVSPFLQRKAFFLILRGFFSITASVSIM SEECSVLKKDGSEYRFKEAPAPATSNSEFAISNDSSVSPFLQRKAFFLILRGFFSITASVSIMS EECSVLKKDGSEYRFKEAPAPATSNSEFAISNDSSVSPFLQRKAFFLILRGFFSITASVSIMSE ECSVLKKDGSEYRFKEAPAPATSN(-) MGLSIVSRRPQHQQHQTQSLR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |