Detail information of Os03g0816900_circ_g.1


General Information
CircRNA Name Os03g0816900_circ_g.1
ID in PlantcircBase osa_circ_022448
Alias NA
Organism Oryza sativa
Position chr3: 34259582-34260296  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0816900
Parent gene annotation Conserved hypothetical protein. (Os03t0816900-01)
Parent gene strand +
Alternative splicing Os03g0816900_circ_g.2 Os03g0816900_circ_g.3
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0816900-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTGGATTTACGAACTTATTGATACCTTTCATTTCAGAAAAAAGCTTTGCGTTGGAGGAAAGG
AGAAACACTCGAATCATTGCTTATCGCAAACTCTGAgtttgatgttgctggtgctggggcctcc
ttgaaacgatactcagacccatctttcttcaagacagaacattcctcggacatgatagaaacgg
atgctgtg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 189
Transcript exons: 34259582-34259708,34260235-34260296
GTTTGATGTTGCTGGTGCTGGGGCCTCCTTGAAACGATACTCAGACCCATCTTTCTTCAAGACA
GAACATTCCTCGGACATGATAGAAACGGATGCTGTGATAGAAAAGAAGCCCCGCAAAATTAAGA
AAAAAGCTTTGCGTTGGAGGAAAGGAGAAACACTCGAATCATTGCTTATCGCAAACTCTGA

Genomic sequence GTTTGATGTTGCTGGTGCTGGGGCCTCCTTGAAACGATACTCAGACCCATCTTTCTTCAAGACA
GAACATTCCTCGGACATGATAGAAACGGATGCTGTGATAGAAAAGAAGCCCCGCAAAATTAAGG
TAATAATTAATCCTCTATTCTTGCCTGATTATTTTTCACTTCGCCTGGGAGCCTTCAGGAAGTA
CACCTAATAGTTTCGTGTGCATGAAATGAACGCGATGCTAGCTGATGTTGTTTTGTATTAAATG
TAATATTTTTGGTAGTCAGCAGTAATAAATATCTTTGCCTGACAGTATTGGTTTTTGCAATGGT
AGGACTTACTAAAACGTTCTTTTTGCATGTCAAATAAAAATCGGGTCAGTTAAATTGCACATGA
AAAAATACAGCAGATGGAAAAGAAAAAGGCATGCTGACCTTATTATTTGAAATGTAAATCCAGA
CCTGATAAATTTTGGAAGGTTGTCCAAGTTAAAATGCCCATTTGTTTAGTTGCTAATATGTTAT
TACCACAACTTGCGTGAAATATAAGCCTGTCCTGGGAACACCCCTTGACCATTTGTGTTCATTG
TTGTTTCTGAATATATATGGATCTTTGTGGTTTTAGTTTTCTTGGATTTACGAACTTATTGATA
CCTTTCATTTCAGAAAAAAGCTTTGCGTTGGAGGAAAGGAGAAACACTCGAATCATTGCTTATC
GCAAACTCTGA
Conservation Information
Conserved circRNAs osi_circ_013816
PMCS 0.244118228
Functional Information
Coding potential Y
Potential coding position 34259662-34260293(+)
34259664-34259584(-)
34259633-34260283(-)
Potential amino acid sequence MIETDAVIEKKPRKIKKKALRWRKGETLESLLIANSEFDVAGAGASLKRYSDPSFFKTEHSSDM
IETDAVIEKKPRKIKKKALRWRKGETLESLLIANSEFDVAGAGASLKRYSDPSFFKTEHSSDMI
ETDAVIEKKPRKIKKKALRWRKGETLESLLIANSEFDVAGAGASLKRYSDPSFFKTEHSSDMIE
TDAVIEKKPRKIKKKALRWRKGETLESLLIANS(+)
MSEECSVLKKDGSEYRFKEAPAPATSNSEFAISNDSSVSPFLQRKAFFLILRGFFSITASVSIM
SEECSVLKKDGSEYRFKEAPAPATSNSEFAISNDSSVSPFLQRKAFFLILRGFFSITASVSIMS
EECSVLKKDGSEYRFKEAPAPATSNSEFAISNDSSVSPFLQRKAFFLILRGFFSITASVSIMSE
ECSVLKKDGSEYRFKEAPAPATSN(-)
MGLSIVSRRPQHQQHQTQSLR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017